Contig 010824:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038D21Sequence713010824 (2)ref|XP_011094655.1|1e-113PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Sesam942010824 (2)ref|XP_010107529.1|1e-124hypothetical protein L484_024382 [Morus notabilis] gb|EXC16211.1| hypothetical p

Alignment

This contig is upended


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rJMSF038D21-                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
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rJMSF038D21-          GGGGATTCATATTGCATCTTCTTAGTACCTAGTTACAAATTGCAGAGAAAAAAGGACAGA
                      ____________________________________________________________
consensus             GGGGATTCATATTGCATCTTCTTAGTACCTAGTTACAAATTGCAGAGAAAAAAGGACAGA
 
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rJMSF038D21-          ATTTCCATGTGGAGGGAGTACAAGGATAGTAACATGTGCATATGCTAAAAGATCATTTTT
                      ____________________________________________________________
consensus             ATTTCCATGTGGAGGGAGTACAAGGATAGTAACATGTGCATATGCTAAAAGATCATTTTT
 
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rJMSF038D21-          TTTTCCAAGTAGTAAATATACAAAAAGAAGACATCCCTCCACAACAAAAATCTAAAAGTC
                      ____________________________________________________________
consensus             TTTTCCAAGTAGTAAATATACAAAAAGAAGACATCCCTCCACAACAAAAATCTAAAAGTC
 
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rJMSF038D21-          AGGTTCATCAGTATTTTCTTCATATCCTAATAAGCTTTTCTATTCTGCAGAGACCCAGTT
                      ____________________________________________________________
consensus             AGGTTCATCAGTATTTTCTTCATATCCTAATAAGCTTTTCTATTCTGCAGAGACCCAGTT
 
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rJMSF038D21-          TTCTTCGAGAGATTTCATGCATCTGAGGGTACCCAAGCCGCCCCATTTCCCGGCCAGCTC
                      ____________________________________________________________
consensus             TTCTTCGAGAGATTTCATGCATCTGAGGGTACCCAAGCCGCCCCATTTCCCGGCCAGCTC
 
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rJMSF038D21-          AACTTCAATGCAACTCCTTCATGGCATGGAACATACTCCTCCATTTTCTTTACGAGCTCC
                      ____________________________________________________________
consensus             AACTTCAATGCAACTCCTTCATGGCATGGAACATACTCCTCCATTTTCTTTACGAGCTCC
 
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rJMSF038D21-          TTGGCTGTAGGTGCAGATACAATGATATGGCGAGCGTTTGGGCTGATGAAGCCTTCCTCC
JMSF038D21+                 GTAGGTGCAGATACAATGATATGGCGAGCGTTTGGGCTGATGAAGCCTTCCTCC
                      ____________________________________________________________
consensus             TTGGCTGTAGGTGCAGATACAATGATATGGCGAGCGTTTGGGCTGATGAAGCCTTCCTCC
 
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rJMSF038D21-          ACCGCTTTGTCAATGAACGACAACAATGAATTGTAGTATCCATCAACATTCAGTAACCCC
JMSF038D21+           ACCGCTTNGTCAATGAACGACAACAATGAATTGTAGTATCCATCAACATTCAGTAACCCC
                      ____________________________________________________________
consensus             ACCGCTTTGTCAATGAACGACAACAATGAATTGTAGTATCCATCAACATTCAGTAACCCC
 
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rJMSF038D21-          ACTGGTTTATCATGAATGCCAAGTTGAGCCCAGGTAATCACTTCCAGTAGCTCCTCCAGA
JMSF038D21+           ACTGGTTTATCATGAATGCCAAGTTGAGCCCAGGTAATCACTTCCAGTAGCTCCTCCAGA
                      ____________________________________________________________
consensus             ACTGGTTTATCATGAATGCCAAGTTGAGCCCAGGTAATCACTTCCAGTAGCTCCTCCAGA
 
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rJMSF038D21-          GTACCATAACCACCTGGTAAGGCAATAAAGGCATCTGAATGTCTTGCCATCTCTGCTTTT
JMSF038D21+           GTACCATAACCACCTGGTAAGGCAATAAAGGCATCTGAATGTCTTGCCATCTCTGCTTTT
                      ____________________________________________________________
consensus             GTACCATAACCACCTGGTAAGGCAATAAAGGCATCTGAATGTCTTGCCATCTCTGCTTTT
 
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rJMSF038D21-          CTTTGATGCATATCTGCAACAGTCTTCACTTCCCCTACTGTTTCACCAGTCAACTCTCGA
JMSF038D21+           CTTTGATGCATATCTGCAACAGTCTTCACTTCCCCTACTGTTTCACCAGTCAACTCTCGA
                      ____________________________________________________________
consensus             CTTTGATGCATATCTGCAACAGTCTTCACTTCCCCTACTGTTTCACCAGTCAACTCTCGA
 
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rJMSF038D21-          GGCATGAGCGTCTTGGGAATAACTCCAAGAACATGGCGGCCACCATCATGAACAGCTTGA
JMSF038D21+           GGCATGAGCGTCTTGGGAATAACTCCAAGAACATGGCGGCCACCATCATGAACAGCTTGA
                      ____________________________________________________________
consensus             GGCATGAGCGTCTTGGGAATAACTCCAAGAACATGGCGGCCACCATCATGAACAGCTTGA
 
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rJMSF038D21-          GAAACCAGACCCATGAGGCCAATGCTGCCTCCACCATAGACCAAATCAATGTTTCTTGAA
JMSF038D21+           GAAACCAGACCCATGAGGCCAATGCTGCCTCCACCATAGACCAAATCAATGTTTCTTGAA
                      ____________________________________________________________
consensus             GAAACCAGACCCATGAGGCCAATGCTGCCTCCACCATAGACCAAATCAATGTTTCTTGAA
 
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rJMSF038D21-          ACCAATTCTTTCCCAATCTCAATAGCAGCGTCCTGATAGCTACTCTTCTTGCCTTGGCTA
JMSF038D21+           ACCAATTCTTTCCCAATCTCAATAGCAGCGTCCTGATAGCTACTCTTCTTGCCTTGGCTA
                      ____________________________________________________________
consensus             ACCAATTCTTTCCCAATCTCAATAGCAGCGTCCTGATAGCTACTCTTCTTGCCTTGGCTA
 
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rJMSF038D21-          CTCCCACAAAAACACACAAATCCTCTTGAATCTCGACGCCTTCATTTCGCCTTCCATTTT
JMSF038D21+           CTCCCAC-AAAACACACAAATCCTCTTGAATCTCGACGCCTTCATTTCGCCTTCCATTTT
                      ____________________________________________________________
consensus             CTCCCACAAAAACACACAAATCCTCTTGAATCTCGACGCCTTCATTTCGCCTTCCATTTT
 
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rJMSF038D21-          CTCTCCCCCCCACTCCTTT                                         
JMSF038D21+           CTCTCCCCCCCACTCCTTTCTTCTTCTTCTTGGGGTTCCTACAAGGAGTTTGAGATAAGA
                      ____________________________________________________________
consensus             CTCTCCCCCCCACTCCTTTCTTCTTCTTCTTGGGGTTCCTACAAGGAGTTTGAGATAAGA
 
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JMSF038D21+           AAGAGAGGATTTTTGTCACTCAGGTTTGCATATTACGGTTGTAGAGAGGTCAGGAGGGGG
                      ____________________________________________________________
consensus             AAGAGAGGATTTTTGTCACTCAGGTTTGCATATTACGGTTGTAGAGAGGTCAGGAGGGGG
 
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JMSF038D21+           CAATGATATTGTATACAACAAAATATTAACAAGACGTGTGCCACAGAATAATACTGCCTG
                      ____________________________________________________________
consensus             CAATGATATTGTATACAACAAAATATTAACAAGACGTGTGCCACAGAATAATACTGCCTG