Contig 010819:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008F20Sequence433010819 (8)778010819 (8)
JMSF026F03Sequence537010819 (8)653010819 (8)
JMSF036K22Sequence652010819 (8)701010819 (8)
JMSF051L17Sequence686010819 (8)752010819 (8)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF036K22- AACACGGAAGATGACTTTCTAAATGGCAAACACGGA
rJMSF026F03- ACACGGAAGATGACTTTCTAAATGGCANACNCGGA
rJMSF051L17- ACACGGAAGATGACTTTCTAAATGGCANACACGGN
rJMSF008F20- TGACTTTCTNATGGCAAACACGGAAGATGACTTTCTAAATGGCANACNCGGA
                      ____________________________________________________________
consensus TGACTTTCTNATGGCAAACACGGAAGATGACTTTCTAAATGGCAAACACGGA
 
. : . : . : . : . : . :
rJMSF036K22- AGATGACTTTC-TAAATGGCAAACACGGAAGATTACTTTCCAAATGGTTGGC-TAGAAGA
rJMSF026F03- AGATGACTTTCGTAAATGGCGAACACGGAAGATTACTTTCCAGATGGTTGGCGTAGAAGA
rJMSF051L17- AGATGACTTTC-TANATGGCAAACACGGAAGATTACTTTCCAAATGGTTGGC-TNGAAGA
rJMSF008F20- AGATGACTTTCGTAAATGGCGAACACGGAAGATTACTTTCCAGATGGTTGGCGTAGAAGA
                      ____________________________________________________________
consensus AGATGACTTTCGTAAATGGCGAACACGGAAGATTACTTTCCAGATGGTTGGCGTAGAAGA
 
. : . : . : . : . : . :
rJMSF036K22- TTGACAGTGTGCTTAGGATTGTGTAATTGGGAATGTCAATTACACAATCCGCCTAAAGAT
rJMSF026F03- TTGACAGTGTGCTTAGGATTGTGTAATTGGGAATGTCAATTACACNNTCCGCCTAGAGAT
rJMSF051L17- TTGACAGTGTGCTTAGGATTGTGTAATTGGGAATGTCAATTACACAATCCGCCTAAAGAT
rJMSF008F20- TTGACAGTGTGCTTAGGATTGTGTAATTGGGAATGTCAATTACACNATCCGCCTAGAGAT
                      ____________________________________________________________
consensus TTGACAGTGTGCTTAGGATTGTGTAATTGGGAATGTCAATTACACAATCCGCCTAGAGAT
 
. : . : . : . : . : . :
rJMSF036K22- AGTTTCAATAGAAAAGGGGAATATATTAATATATTATGTACCTCTGAATTCTAATGGAAC
rJMSF026F03- NGTTTCNNTAGAANNGGGGAATATATTAATATATTATGTACCTCTGAATTCTAATGGAAC
rJMSF051L17- AGTTTCAATAGAAAAGGGGAATATATTAATATATTATGTACCTCTGAATTCTAATGGAAC
rJMSF008F20- AGTTTCNATAGAANNGGGGAATATATTAATATATTATGTACCTCTGAATTCTAATGGAAC
                      ____________________________________________________________
consensus AGTTTCAATAGAAAAGGGGAATATATTAATATATTATGTACCTCTGAATTCTAATGGAAC
 
. : . : . : . : . : . :
rJMSF036K22- TTTA-GTTTTGAACTAAAGTCTTCTGTACTTCTTCAACTGTTTATTTTGTTGTTGACTTA
rJMSF026F03- TTTA-GTTTTGAACTAAGGTCNTCTGTACTTCTTCAGCTGNTTATTTTGNTGTTGACTTA
rJMSF051L17- TTTAGGTTTTGAACTAAAGTCTTCTGTACTTCTTCAACTGTTTATTTTGTTGTTGACTTA
rJMSF008F20- TTTA-GTTTTGAACTAAGGTCTTCTGTACTTCTTCAGCTGTTTATTTTGTTGTTGACTTA
JMSF026F03+ TTCAACTGTTTATNTTGTTGTTGNCTTN
                      ____________________________________________________________
consensus TTTA-GTTTTGAACTAAGGTCTTCTGTACTTCTTCAACTGTTTATTTTGTTGTTGACTTA
 
. : . : . : . : . : . :
rJMSF036K22- ATACAGTGCTTTTTTCCCTTATTTTCATAGAAAAAAAAGACCTATGAAATAAGTAGACTA
rJMSF026F03- ATACAGTGCTTTTTTCCCTTATTTTCATAGAANANAAAGACCTATGAAATAAGTAGACNA
rJMSF051L17- ATACAGTGCTTTTTTCCCTTATTTTCATAGAAAAAAAAGACCTATGANANAAGTAGACTA
rJMSF008F20- ATACAGTGCTTTTTTCCCTTATTTTCATAGAAAANAAAGACCTATGAAATAAGTAGACTA
JMSF026F03+ ATACAGTGCTTTTTTCCCNTATTTTCNTAGAAAAAAAAGACCTATGAAATAAGTNGACTA
JMSF051L17+ ATAGAAAAAAAAGACCTATGAAATAAGTAGACTA
                      ____________________________________________________________
consensus ATACAGTGCTTTTTTCCCTTATTTTCATAGAAAAAAAAGACCTATGAAATAAGTAGACTA
 
. : . : . : . : . : . :
rJMSF036K22- TAAGCAAAACTCAAACTACTTAATATACACATGCATTCCATGAAAACCAATACTCATAAA
rJMSF026F03- TAAGCAGNACTCNNACTACTTAATATACACATGCNTTCCATGAAAACCAATACTCANANA
rJMSF051L17- TAAGCAAAACTCAAACTACTTAATATACACATGCATTCCATGAAAACCAATACTCATAAA
rJMSF008F20- TAAGCAGNACTCAAACTACTTAATATACACATGCATTCCATGAAAACCAATACTCANAAA
JMSF026F03+ TNAGCAAAACTCAAACTACTTAATATACACATGCATTCCATGAAAACCAATACTCATAAA
JMSF008F20+ TACTTAATATACACATGCATTCCATGAAAACCAATACTCATAAA
JMSF051L17+ TAAGCAAAACTCAAACTACTTAATATACACATGCATTCCATGAAAACCAATACTCATAAA
                      ____________________________________________________________
consensus TAAGCAAAACTCAAACTACTTAATATACACATGCATTCCATGAAAACCAATACTCATAAA
 
. : . : . : . : . : . :
rJMSF036K22- AAACAGAAATCACATTAACAAAATAACATTGCAGTTTAAAAAGTGTATTCAGAATAATTC
rJMSF026F03- AAACCGANATCACATTAACAAAATAACATTGCAGTTTANNAAGTGNATTCAGAATAATTC
rJMSF051L17- AAACNGANNTCACNTTANCAAAATAACATTGCAGNTTAAAAAGTGTATTCAGAATAANTC
rJMSF008F20- AAACNGAAATCACATTAACAAAATAACATTGCAGTTTAANAAGTGTATTCAGAATAATTC
JMSF026F03+ AAACAGAAATCACATTANCAAAATANCANTGCAGNTTAAAAAGTGTATTCNGAATAATTC
JMSF008F20+ AAACAGAAATCACATTAACAAAATAACATTGCAGTTTAAAAAGTGTATTCAGAATAATTC
JMSF051L17+ AAACAGAAATCACATTAACAAAATAACATTGCAGTTTAAAAAGTGTATTCAGAATAATTC
                      ____________________________________________________________
consensus AAACAGAAATCACATTAACAAAATAACATTGCAGTTTAAAAAGTGTATTCAGAATAATTC
 
. : . : . : . : . : . :
rJMSF036K22- ACATTTGGCTTACAAATTGCAAGAAATCCATGAATGTACATTTTTTAGCAAATAAAGGAA
rJMSF026F03- ACATTTGGCTTACAAATTGCAAGAAATCCATGAATGTGCATTTTTTAGCAAATAANGGAA
rJMSF051L17- ACATTTGGCTTACAAATTGCAAGAAATCCATGAGTGTACATTTTTTAGCNNATAAAGGAA
rJMSF008F20- ACATTTGGCTTACAAATTGCAAGAAATCCATGAATGTNCATTTTTTAGCAAATAAAGGAA
JMSF026F03+ ACATTTGGCTTACAAATTGCAAGAAATCCATGAATGTNCATTNTTTAGCAAATAAAGGAA
JMSF008F20+ ACATTTGGCTTACAAATTGCAAGAAATCCATGAATGTACATTTTTTAGCAAATAAAGGAA
JMSF051L17+ ACATTTGGCTTACAAATTGCAAGAAATCCATGAATGTACATTTTTTAGCAAATAAAGGAA
JMSF036K22+ CTTACAAATTGCAAGAAATCCATGAATGTACATTTTTTAGCAAATAAAGGAA
                      ____________________________________________________________
consensus ACATTTGGCTTACAAATTGCAAGAAATCCATGAATGTACATTTTTTAGCAAATAAAGGAA
 
. : . : . : . : . : . :
rJMSF036K22- CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
rJMSF026F03- CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
rJMSF051L17- CCAANNTACACAGTAATTTAATAAATGTCCTGAGACTCTTACGAACTTTATTTCAATTAA
rJMSF008F20- CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
JMSF026F03+ CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
JMSF008F20+ CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
JMSF051L17+ CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
JMSF036K22+ CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
                      ____________________________________________________________
consensus CCAAAATACACAGTAATTTAATAAATGTCCTGAGACTCTTACAAACTTTATTTCAATTAA
 
. : . : . : . : . : . :
rJMSF036K22- GTGTGTGATATTCCCATACCATAACATGTTGACAAATACATAGAACTATAGTACCTGCAA
rJMSF026F03- GTGTGTGATATTCCCATACCATAACATGTTGACNAATACATAGAACTATAGTACCTGCAA
rJMSF051L17- GNGTGTGATATTCCCATACCATACCATGTNGACANATACANAGAACTNTANTACCTGCGA
rJMSF008F20- GTGTGTGATATTCCCATACCATAACATGTTGACNAATACATAGAACTATAGTACCTGCAA
JMSF026F03+ GTGTGTGATATTCCCATACCATAACATGTTGACAAATACATAGAACTATAGTACNTGCAA
JMSF008F20+ GTGTGTGATATTCCCATACCATAACATGTTGACAAATACATAGAACTATAGTACCTGCAA
JMSF051L17+ GTGTGTGATATTCCCATACCATAACATGTTGACAAATACATAGAACTATAGTACCTGCAA
JMSF036K22+ GTGTGTGATATTCCCATACCATAACATGTTGACAAATACATAGAACTATAGTACCTGCAA
                      ____________________________________________________________
consensus GTGTGTGATATTCCCATACCATAACATGTTGACAAATACATAGAACTATAGTACCTGCAA
 
. : . : . : . : . : . :
rJMSF036K22- GGTAAACTGAGAA-AATTATAAGTAATACTGCATGTGCA
rJMSF026F03- AGT
rJMSF051L17- AGTAGACTGAGAACAATTATNAGTAATACTGCATGTGCAATTCCGTGCACCATATTGTTC
rJMSF008F20- AGTAAACTGAGAAAAATTATAAGTAATACTGCATGTGCAATTCCGTGCAACATATTGTTC
JMSF026F03+ AGTAAACTGAGAAAANTTNTANGTAATNCNGCATGTGCANTTCCGTGCAACATATTGTTC
JMSF008F20+ AGTAAACTGAGAAAAATTATAAGTAATACTGCATGTGCAATTCCGTGCAACATATTGTTC
JMSF051L17+ AGTAAACTGAGAAAAATTATAAGTAATACTGCATGTGCAATTCCGTGCAACATATTGTTC
JMSF036K22+ AGTAAACTGAGAAAAATTATAAGTAATACTGCATGTGCAATTCCGTGCAACATATTGTTC
                      ____________________________________________________________
consensus AGTAAACTGAGAAAAATTATAAGTAATACTGCATGTGCAATTCCGTGCAACATATTGTTC
 
. : . : . : . : . : . :
rJMSF051L17- AATAGTGGTGTA-TTTGTCTAGAATTCATGAATGTTTAA
rJMSF008F20- AATAGTGGTGTATTTTGTCTAGAATTCATGAATGTTTAAATAGTAAACCNAAATTAGGAA
JMSF026F03+ AATAGTGGTGTATTTTGTNTAGAATTCATGAATGTTTAAATNGTAAACCAAAATTAGGAN
JMSF008F20+ AATAGTGGTGTATTTTGTCTAGAATTCATGAATGTTTAAATAGTAAACCAAAATTAGGAA
JMSF051L17+ AATAGTGGTGTATTTTGTCTAGAATTCATGAATGTTTAAATAGTAAACCAAAATTAGGAA
JMSF036K22+ AATAGTGGTGTATTTTGTCTAGAATTCATGAATGTTTAAATAGTAAACCAAAATTAGGAA
                      ____________________________________________________________
consensus AATAGTGGTGTATTTTGTCTAGAATTCATGAATGTTTAAATAGTAAACCAAAATTAGGAA
 
. : . : . : . : . : . :
rJMSF008F20- TGAAAGA
JMSF026F03+ TGAAAGAACTCATCTTAAGCAAACCCTAG
JMSF008F20+ TGAAAGAACTCATCTTAAGCAAACCCTAG
JMSF051L17+ TGAAAGAACTCATCTTAAGCAAACCCTAGGCGATATCCCAACATGCACCTGAAATGAAAG
JMSF036K22+ TGAAAGAACTCATCTTAAGCAAACCCTAGGCGATATCCCAACATGCACCTGAAATGAAAG
                      ____________________________________________________________
consensus TGAAAGAACTCATCTTAAGCAAACCCTAGGCGATATCCCAACATGCACCTGAAATGAAAG
 
. : . : . : . : . : . :
JMSF051L17+ CCCAGATCTGATTTCATGGCTTTTTGAGTCAGTCAGTCAACACAGCAATCTTATGCCGGA
JMSF036K22+ CCCAGATCTGATTTCATGGCTTTTTGAGTCAGTCAGTCAACACAGCAATCTTATGCCGGA
                      ____________________________________________________________
consensus CCCAGATCTGATTTCATGGCTTTTTGAGTCAGTCAGTCAACACAGCAATCTTATGCCGGA
 
. : . : . : . : . : . :
JMSF051L17+ ATTTGTGATGCGAACTCACTACGGACGGTTTAGCTTTCGTCTAACGGTGAAATATCCAAT
JMSF036K22+ ATTTGTGATGCGAACTCACTACGGACGGTTTAGCTTTCGTCTAACGGTGAAATATCCAAT
                      ____________________________________________________________
consensus ATTTGTGATGCGAACTCACTACGGACGGTTTAGCTTTCGTCTAACGGTGAAATATCCAAT
 
. : . : . : . : . : . :
JMSF051L17+ TGCGAAGATCCGGCATAAGCAAAGAAAAAACCATGTCTGCTCCAAAGATCC
JMSF036K22+ TGCGAAGATCCGGCATAAGCAAAGAAAAAACCATGTCTGCTCCAAAGATCCATTCCAAAA
                      ____________________________________________________________
consensus TGCGAAGATCCGGCATAAGCAAAGAAAAAACCATGTCTGCTCCAAAGATCCATTCCAAAA
 
. : . : . : . : . : . :
JMSF036K22+ TCACGGATTTTGGAACTTATCTACCCAAGCGACACTCAGAATCTCAATGTCTCAATAATA
                      ____________________________________________________________
consensus TCACGGATTTTGGAACTTATCTACCCAAGCGACACTCAGAATCTCAATGTCTCAATAATA
 
. : . : . : . : . : . :
JMSF036K22+ AGTTAAAAATCTACACCAATTTTTAGAGAGAAGTGAGAGCTATTCTTCATCGTGACTCTC
                      ____________________________________________________________
consensus AGTTAAAAATCTACACCAATTTTTAGAGAGAAGTGAGAGCTATTCTTCATCGTGACTCTC