Contig 010815:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036D18Sequence669010815 (2)emb|CDP11398.1|2e-77unnamed protein product [Coffea canephora]741010815 (2)emb|CDP11398.1|6e-48unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF036D18-                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
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rJMSF036D18-          CGTCTCACATTAAAAAGCTATATATAGATGCGAAGATAACAACAAATTAAGAAATGTTAC
                      ____________________________________________________________
consensus             CGTCTCACATTAAAAAGCTATATATAGATGCGAAGATAACAACAAATTAAGAAATGTTAC
 
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rJMSF036D18-          AAGTCTACATATAAGCTAGAATACTAGTACTAGTAATAATAATAACTTGATAGTAAAAGG
                      ____________________________________________________________
consensus             AAGTCTACATATAAGCTAGAATACTAGTACTAGTAATAATAATAACTTGATAGTAAAAGG
 
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rJMSF036D18-          GATAATATATATAATCATCTTTTATTTGAAAATGATATTGGAGATTTTAAAAGCTAAGGT
                      ____________________________________________________________
consensus             GATAATATATATAATCATCTTTTATTTGAAAATGATATTGGAGATTTTAAAAGCTAAGGT
 
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rJMSF036D18-          AGGGTGGATGGGATCAAAATCTTGAATAATGAAATGCAACATGATGATCATGTTTTGGGA
                      ____________________________________________________________
consensus             AGGGTGGATGGGATCAAAATCTTGAATAATGAAATGCAACATGATGATCATGTTTTGGGA
 
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rJMSF036D18-          GCATCCATGGCCACCACCACCGCCACCTGGATATCGGCCGATGTGCGAGAAACCGTGTCC
                      ____________________________________________________________
consensus             GCATCCATGGCCACCACCACCGCCACCTGGATATCGGCCGATGTGCGAGAAACCGTGTCC
 
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rJMSF036D18-          AATTCAACCACCTCTTTGCTTTGATTCACCACCATATTCTTGTTCTCCTTTTGCTTCCCC
                      ____________________________________________________________
consensus             AATTCAACCACCTCTTTGCTTTGATTCACCACCATATTCTTGTTCTCCTTTTGCTTCCCC
 
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rJMSF036D18-          CACAAAAACCCATAAAGCCCTAACACCAGCAAAGCTGCTCCCAAGATACTGCCCAAGTGA
                      ____________________________________________________________
consensus             CACAAAAACCCATAAAGCCCTAACACCAGCAAAGCTGCTCCCAAGATACTGCCCAAGTGA
 
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rJMSF036D18-          AGGATTTCATTCAAAAAAAGAACTGAAAAGAAGGCTGTCAACATAAGTGCCAATGGAGTG
                      ____________________________________________________________
consensus             AGGATTTCATTCAAAAAAAGAACTGAAAAGAAGGCTGTCAACATAAGTGCCAATGGAGTG
 
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rJMSF036D18-          AACATGCTTGCATATACTGGCCCTTTCTTCTCCACAACCCATGCTTGTAACCAATAAGAT
JMSF036D18+                                                              CAATAAGAT
                      ____________________________________________________________
consensus             AACATGCTTGCATATACTGGCCCTTTCTTCTCCACAACCCATGCTTGTAACCAATAAGAT
 
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rJMSF036D18-          ATCCCTGTCACCACTATTCCACAATATGCCACAGATAGAAGATTGATATCCCATCCAAGT
JMSF036D18+           ATCCCTGTCACCACTATTCCACAATATGCCACAGATAGAAGATTGATATCCCATCCAAGT
                      ____________________________________________________________
consensus             ATCCCTGTCACCACTATTCCACAATATGCCACAGATAGAAGATTGATATCCCATCCAAGT
 
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rJMSF036D18-          TTCCATGATGACAAATCTCTCTCCTTAATTGCACCCCACAGTGTTGACATTACACAGCAA
JMSF036D18+           TTCCATGATGACAAATCTCTCTCCTTAATTGCACCCCACAGTGTTGACATTACACAGCAA
                      ____________________________________________________________
consensus             TTCCATGATGACAAATCTCTCTCCTTAATTGCACCCCACAGTGTTGACATTACACAGCAA
 
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rJMSF036D18-          ATGGAACACTGAAGAGTTACCAGCCGAAGCTTTGCTGGATATTGCTTCATGATAGGAGCC
JMSF036D18+           ATGGAACACTGAAGAGTTACCAGCCGAAGCTTTGCTGGATATTGCTTCATGATAGGAGCC
                      ____________________________________________________________
consensus             ATGGAACACTGAAGAGTTACCAGCCGAAGCTTTGCTGGATATTGCTTCATGATAGGAGCC
 
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rJMSF036D18-          TGCATGATGAGCCAA                                             
JMSF036D18+           TGCATGATGAGCCAAAGTGACCATGTCAAGTTAGCTCCAAGAATAAGAAGAGAACCTCTT
                      ____________________________________________________________
consensus             TGCATGATGAGCCAAAGTGACCATGTCAAGTTAGCTCCAAGAATAAGAAGAGAACCTCTT
 
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JMSF036D18+           ATCCAATCTTGTTTACTATATGTAGTGTTTGCGGAAAGGTCAGACTTTTGCATTGCTTTA
                      ____________________________________________________________
consensus             ATCCAATCTTGTTTACTATATGTAGTGTTTGCGGAAAGGTCAGACTTTTGCATTGCTTTA
 
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JMSF036D18+           GGTGGGTACAAGGTAGGGCCTTTATACAAGGTAAAAACCATGGCCCCAATTATGCTCAAC
                      ____________________________________________________________
consensus             GGTGGGTACAAGGTAGGGCCTTTATACAAGGTAAAAACCATGGCCCCAATTATGCTCAAC
 
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JMSF036D18+           ACACAACCCACCACTTTAGCTTTTCCATGGGATTTCTCTATCGCCAACCTCTCCAACCTT
                      ____________________________________________________________
consensus             ACACAACCCACCACTTTAGCTTTTCCATGGGATTTCTCTATCGCCAACCTCTCCAACCTT
 
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JMSF036D18+           AAACAAATTGCTATGATAAACACCATAGCAGGGATGGTGTTGGTGGCTGCTGTAACAAAC
                      ____________________________________________________________
consensus             AAACAAATTGCTATGATAAACACCATAGCAGGGATGGTGTTGGTGGCTGCTGTAACAAAC
 
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JMSF036D18+           GTTGCAGACACATAGTTCAACCCCATGTAAAACAGGTTCAAGCTCAGGTTAATTCCACAC
                      ____________________________________________________________
consensus             GTTGCAGACACATAGTTCAACCCCATGTAAAACAGGTTCAAGCTCAGGTTAATTCCACAC
 
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JMSF036D18+           AAGGAGAGGATGCAAATCTTGCATAGCAATTTGCATGAGAGATGAGCTGAGTTCTGCCTT
                      ____________________________________________________________
consensus             AAGGAGAGGATGCAAATCTTGCATAGCAATTTGCATGAGAGATGAGCTGAGTTCTGCCTT
 
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JMSF036D18+           TCGAAGAAGAAAGCGAAAGGAGCCAAGGCAAGAGCGGCGAAGGCTTGTCGATAAGCAACC
                      ____________________________________________________________
consensus             TCGAAGAAGAAAGCGAAAGGAGCCAAGGCAAGAGCGGCGAAGGCTTGTCGATAAGCAACC