Contig 010789:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042H09Sequence627010789 (8)sp|Q41359.1|PR1_SAMNI3e-60RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu393010789 (8)ref|XP_002459696.1|2e-19hypothetical protein SORBIDRAFT_02g008970 [Sorghum bicolor] gb|EER96217.1| hypot
JMFN006L16Sequence620010789 (8)ref|XP_008652242.1|8e-43PREDICTED: pathogenesis-related protein 1-like [Zea mays] tpg|DAA60242.1| TPA: h
JMFN012P07Sequence627010789 (8)sp|Q41359.1|PR1_SAMNI3e-60RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu
JMFN029B20Sequence604010789 (8)sp|Q41359.1|PR1_SAMNI3e-60RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu
JMFN038K05Sequence619010789 (8)sp|Q41359.1|PR1_SAMNI4e-50RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu
JMSF034B03Sequence709010789 (8)sp|Q41359.1|PR1_SAMNI8e-60RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu729010789 (8)sp|Q41359.1|PR1_SAMNI1e-59RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu

Alignment

This contig is upended


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JMFN006L16- GAGAACTAGTC
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consensus GAGAACTAGTC
 
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JMFN006L16- TCGAGXXXXXXXXXXXXXXXXXXXXXAAACTAAAGAGAAGAAAATTATATATATTATGTT
rJMFF042H09- AAAATTATATATATTATGTT
JMFN038K05+ AAAATTATATATATTATGTT
                      ____________________________________________________________
consensus TCGAGNNNNNNNNNNNNNNNNNNNNNAAACTAAAGAGAAGAAAATTATATATATTATGTT
 
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JMFN006L16- GATAACAAGATCAGAACATACACTTTTGAAGTCTACATACACT-GCTAGCAGCCTCTAGG
rJMFF042H09- GATAACAAGATCAAAACATACACTTTTGAAGTCTACATACCCT-GCTAGCAGCCTCTAGG
JMFN038K05+ GATAACAAGATCAGAACATACACTTTTGAAGTCTACATACACT-GCTAGCAGCCTCTAGG
rJMSF034B03- TACACTTTTGAAGTCTACATACACTGGCTAGCAGCCTCTAGG
                      ____________________________________________________________
consensus GATAACAAGATCAGAACATACACTTTTGAAGTCTACATACACT-GCTAGCAGCCTCTAGG
 
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JMFN006L16- CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
rJMFF042H09- CCTTGTTTTCTCCATAGAACATGGGGTTTAATTATATATTGCTCAAGCATGCATGCATGC
JMFN038K05+ CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
JMFN012P07+ TGC
rJMSF034B03- CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
JMSF034B03+ CCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
                      ____________________________________________________________
consensus CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
 
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JMFN006L16- ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
rJMFF042H09- ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAAACCGGTACAACTTG
JMFN038K05+ ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
JMFN029B20+ ATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
JMFN012P07+ ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
rJMSF034B03- ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
JMFF042H09+ GTACGTACGTCCGGTAGACCGGTACGACTTG
JMSF034B03+ ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
                      ____________________________________________________________
consensus ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
 
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JMFN006L16- TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
rJMFF042H09- TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFN038K05+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFN029B20+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFN012P07+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
rJMSF034B03- TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFF042H09+ -TTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMSF034B03+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
                      ____________________________________________________________
consensus TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
 
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JMFN006L16- GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
rJMFF042H09- GGGAGGAAAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFN038K05+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFN029B20+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFN012P07+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
rJMSF034B03- GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFF042H09+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMSF034B03+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
                      ____________________________________________________________
consensus GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
 
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JMFN006L16- ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
rJMFF042H09- ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFN038K05+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFN029B20+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFN012P07+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
rJMSF034B03- ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFF042H09+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMSF034B03+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
                      ____________________________________________________________
consensus ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
 
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JMFN006L16- CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
rJMFF042H09- CGGCGGCGCGT
JMFN038K05+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMFN029B20+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMFN012P07+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
rJMSF034B03- CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMFF042H09+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMSF034B03+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
                      ____________________________________________________________
consensus CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
 
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JMFN006L16- CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMFN038K05+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCACTTCCCCATGCTAGGTTTTCTCCGTA
JMFN029B20+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMFN012P07+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
rJMSF034B03- CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMFF042H09+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMSF034B03+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
                      ____________________________________________________________
consensus CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
 
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JMFN006L16- CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFN038K05+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFN029B20+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFN012P07+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
rJMSF034B03- CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFF042H09+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMSF034B03+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
                      ____________________________________________________________
consensus CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
 
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JMFN006L16- GGCAACCGCC
JMFN038K05+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGC
JMFN029B20+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
JMFN012P07+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
rJMSF034B03- GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
JMFF042H09+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
JMSF034B03+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
                      ____________________________________________________________
consensus GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
 
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JMFN029B20+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
JMFN012P07+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
rJMSF034B03- GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
JMFF042H09+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
JMSF034B03+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
                      ____________________________________________________________
consensus GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
 
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JMFN029B20+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
JMFN012P07+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
rJMSF034B03- CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
JMFF042H09+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
JMSF034B03+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
                      ____________________________________________________________
consensus CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
 
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JMFN029B20+ CATTTTTTATTTTTTTTTGGCTTC
JMFN012P07+ CATTTTTTATTTTTTTTTGGCTTC
rJMSF034B03- CATTTTTTATTTTTTTTTGGCTTC
JMFF042H09+ CATTTTTTATTTTTTTTTGGCTTCTCAATACCGGAAAAGATTGATGAATACAAAGT
JMSF034B03+ CATTTTTTATTTTTTTTTGGCTTCTCAATACCGGAAAAGATTGATGAATACAAAGTGTTC
                      ____________________________________________________________
consensus CATTTTTTATTTTTTTTTGGCTTCTCAATACCGGAAAAGATTGATGAATACAAAGTGTTC