| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS065C07 | Sequence | 642 | 010778 (5) | gb|KJB22038.1| | 3e-69 | hypothetical protein B456_004G026700 [Gossypium raimondii] gb|KJB22039.1| hypoth | |||||
| JMFS070E02 | Sequence | 625 | 010778 (5) | gb|KHG28533.1| | 3e-72 | Villin-4 -like protein [Gossypium arboreum] | |||||
| JMFS114F09 | Sequence | 574 | 010778 (5) | gb|KJB22038.1| | 2e-79 | hypothetical protein B456_004G026700 [Gossypium raimondii] gb|KJB22039.1| hypoth | |||||
| JMFS148B08 | Sequence | 620 | 010778 (5) | gb|KHG28533.1| | 7e-80 | Villin-4 -like protein [Gossypium arboreum] | |||||
| JMSF032G06 | Sequence | 642 | 010778 (5) | gb|KHG28533.1| | 8e-60 | Villin-4 -like protein [Gossypium arboreum] | 705 | 005732 (3) | ref|XP_009624205.1| | 2e-49 | PREDICTED: villin-4-like [Nicotiana tomentosiformis] ref|XP_009624206.1| PREDICT |
This contig is upended
. : . : . : . : . : . :
JMFS114F09+ G
JMFS148B08+ TAACTCAG
____________________________________________________________
consensus TAACTCAG
. : . : . : . : . : . :
JMFS114F09+ CATGCTTGAACCCTGATGCCACTCCACCTTCTTGGGGAATTATACATGGCTTGAAATAAG
JMFS148B08+ CATGCTTGAACCCTGATGCCACTCCACCTTCTTGGGGAATTATACATGGCTTGAAATAAG
JMFS070E02+ TCTTGGGGAATTATACATGGCTTGAAATAAG
JMFS065C07+ ATACATGGCTTGAAATAAG
____________________________________________________________
consensus CATGCTTGAACCCTGATGCCACTCCACCTTCTTGGGGAATTATACATGGCTTGAAATAAG
. : . : . : . : . : . :
JMFS114F09+ AAAGGAACTTCTCAGTTTCATGGCCTTGTACTTCACGATATTGTACAGAACGTCCTCCAA
JMFS148B08+ AAAGGAACTTCTCAGTTTCATGGCCTTGTACTTCACGATATTGTACAGCACGTCCTCCAA
JMFS070E02+ AAAGGAACTTCTCAGTTTCATGGCCTTGTACTTCACGATATTGTACAGCACGTCCTCCAA
JMFS065C07+ AAAGGAACTTCTCAGTTTCATGGCCTTGTACTTCACGATATTGTACAGCACGTCCTCCAA
JMSF032G06+ CATGGCCTTGTACTTCACGATATTGTACAGCACGTCCTCCAA
____________________________________________________________
consensus AAAGGAACTTCTCAGTTTCATGGCCTTGTACTTCACGATATTGTACAGCACGTCCTCCAA
. : . : . : . : . : . :
JMFS114F09+ GGGCTGCATCTAACTCAACTGTTTTAATGGCTGCAGCACCAGCTTCATCCTGACTTGTAT
JMFS148B08+ GGGCTGCATCTAACTCAACTGTTTTAATGGCTGCAGCACCAGCTTCATCCTGACTTGTAT
JMFS070E02+ GGGCTGCATCTAACTCAACTGTTTTAATGGCTGCAGCACCAGCTTCATCCTGACTTGTAT
JMFS065C07+ GGGCTGCATCTAACTCAACTGTTTTAATGGCTGCAGCACCAGCTTCATCCTGACTTGTAT
JMSF032G06+ GGGCTGCATCTAACTCAACTGTTTTAATGGCTGCAGCACCAGCTTCATCCTGACTTGTAT
____________________________________________________________
consensus GGGCTGCATCTAACTCAACTGTTTTAATGGCTGCAGCACCAGCTTCATCCTGACTTGTAT
. : . : . : . : . : . :
JMFS114F09+ CTTTACCAAGCCAATAATGAATATCATGTCGTAAGGCACCACTTTTTAAGGCAATGGTCT
JMFS148B08+ CTTTACCAAGCCAATAATGAATATCATGTCGTAAGGCACCACTTTTTAAGGCAATGGTCT
JMFS070E02+ CTTTACCAAGCCAATAATGAATATCATGTCGTAAGGCACCACTTTTTAAGGCAATGGTCT
JMFS065C07+ CTTTACCAAGCCAATAATGAATATCATGTCGTAAGGCACCACTTTTTAAGGCAATGGTCT
JMSF032G06+ CTTTACCAAGCCAATAATGAATATCATGTCGTAAGGCACCACTTTTTAAGGCAATGGTCT
____________________________________________________________
consensus CTTTACCAAGCCAATAATGAATATCATGTCGTAAGGCACCACTTTTTAAGGCAATGGTCT
. : . : . : . : . : . :
JMFS114F09+ TCAGAACAACATAAGAGTCTCCTGTGAAAAATTTTCCGTAATGTGATTTTGAAATAGGGA
JMFS148B08+ TCAGAACAACATAAGAGTCTCCTGTGAAAAATTTTCCGTAATGTGATTTTGAAATAGGGA
JMFS070E02+ TCAGAACAACATAAGAGTCTCCTGTGAAAAATTTTCCGTAATGTGATTTTGAAATAGGGA
JMFS065C07+ TCAGAACAACATAAGAGTCTCCTGTGAAAAATTTTCCGTAATGTGATTTTGAAATAGGGA
JMSF032G06+ TCAGAACAACATAAGAGTCTCCTGTGAAAAATTTTCCGTAATGTGATTTTGAAATAGGGA
____________________________________________________________
consensus TCAGAACAACATAAGAGTCTCCTGTGAAAAATTTTCCGTAATGTGATTTTGAAATAGGGA
. : . : . : . : . : . :
JMFS114F09+ CAGGACGAAAATTTTCAATGCGCCATATCTCAATCCCAGCTTTCTGGCCTGCCCCTTGGA
JMFS148B08+ CAGGACGAAAATTTTCAATGCGCCATATCTCAATCCCAGCTTTCTGGCCTGCCCCTTGGA
JMFS070E02+ CAGGACGAAAATTTTCAATGCGCCATATCTCAATCCCAGCTTTCTGGCCTGCCCCTTGGA
JMFS065C07+ CAGGACGAAAATTTTCAATGCGCCATATCTCAATCCCAGCTTTCTGGCCTGCCCCTTGGA
JMSF032G06+ CAGGACGAAAATTTTCAATGCGCCATATCTCAATCCCAGCTTTCTGGCCTGCCCCTTGGA
____________________________________________________________
consensus CAGGACGAAAATTTTCAATGCGCCATATCTCAATCCCAGCTTTCTGGCCTGCCCCTTGGA
. : . : . : . : . : . :
JMFS114F09+ AAGCTGGATCCAAATCTCTCATTGAAACAGACATAGTAGTATTGCAGTGTCTCCAATTTC
JMFS148B08+ AAGCTGGATCCAAATCTCTCATTGAAACAGACATAGTAGTATTGCAGTGTCTCCAATTTC
JMFS070E02+ AAGCTGGATCCAAATCTCTCATTGAAACAGACATAGTAGTATTGCAGTGTCTCCAATTTC
JMFS065C07+ AAGCTGGATCCAAATCTCTCATTGAAACAGACATAGTAGTATTGCAGTGTCTCCAATTTC
JMSF032G06+ AAGCTGGATCCAAATCTCTCATTGAAACAGACATAGTAGTATTGCAGTGTCTCCAATTTC
____________________________________________________________
consensus AAGCTGGATCCAAATCTCTCATTGAAACAGACATAGTAGTATTGCAGTGTCTCCAATTTC
. : . : . : . : . : . :
JMFS114F09+ TTTCTCTACTTTTATCAACGAGAATGATGAAGAGTATCCAATGATGAATGAGTTGCTTTC
JMFS148B08+ TTTCTCTACTTTTATCAACGAGAATGATGAAGAGTATCCAATGATGAATGAGTTGCTTTC
JMFS070E02+ TTTCTCTACTTTTATCAACGAGAATGATGAAGAGTATCCAATGATGAATGAGTTGCTTTC
JMFS065C07+ TTTCTCTACTTTTATCAACGAGAATGATGAAGAGTATCCAATGATGAATGAGTTGCTTTC
JMSF032G06+ TTTCTCTACTTTTATCAACGAGAATGATGAAGAGTATCCAATGATGAATGAGTTGCTTTC
____________________________________________________________
consensus TTTCTCTACTTTTATCAACGAGAATGATGAAGAGTATCCAATGATGAATGAGTTGCTTTC
. : . : . : . : . : . :
JMFS114F09+ ACCGGTTTTGTAAATGAGTTTC
JMFS148B08+ ACCGGTTTTGTAAATGAGTTTCTAATCGTCGGAACTGAATTATTAATGCTAAGCGATGCG
JMFS070E02+ ACCGGTTTTGTAAATGAGTTTCTAATCGTCGGAACTGAATTATTAATGCTAAGCGATGCG
JMFS065C07+ ACCGGTTTTGTAAATGAGTTTCTAATCGTCGGAACTGAATTATTAATGCTAAGCGATGCG
JMSF032G06+ ACCGGTTTTGTAAATGAGTTTCTAATCGTCGGAACTGAATTATTAATGCTAAGCGATGCG
____________________________________________________________
consensus ACCGGTTTTGTAAATGAGTTTCTAATCGTCGGAACTGAATTATTAATGCTAAGCGATGCG
. : . : . : . : . : . :
JMFS148B08+ ATTAACAGATCGAAATCCAATTACGAAACCGAGAAGCGCTAGTTTTGAACTACAATGGGA
JMFS070E02+ ATTAACAGATCGAAATCCAATTACGAAACCGAGAAGCGCTAGTTTTGAACTACAATGGGA
JMFS065C07+ ATTAACAGATCGAAATCCAATTACGAAACCGAGAAGCGCAAGTTTTGAACTACAATGGGA
JMSF032G06+ ATTAACAGATCGAAATCCAATTACGAAACCGAGAAGCGCTAGTTTTGAACTACAATGGGA
____________________________________________________________
consensus ATTAACAGATCGAAATCCAATTACGAAACCGAGAAGCGCTAGTTTTGAACTACAATGGGA
. : . : . : . : . : . :
JMFS148B08+ AAGTGATTTGCA
JMFS070E02+ AAGTGATTTGCACAATTGCAGTAGCGTGAGCTAGAGAGAGGAGAGAGGAGGGAG
JMFS065C07+ AAGTGATTTGCACAATTGCAGTAGCGTGAGCTAGAGAGAGGAGAGAGGAGGGAGGGGTGG
JMSF032G06+ AAGTGATTTGCACAATTGCAGTAGCGTGAGCTAGAGAGAGGAGAGAGGAGGGAGGGGTGG
____________________________________________________________
consensus AAGTGATTTGCACAATTGCAGTAGCGTGAGCTAGAGAGAGGAGAGAGGAGGGAGGGGTGG
. : . : . : . : . : . :
JMFS065C07+ AGCGAATGATGAGCTGCCAGTCG
JMSF032G06+ AGCGAATGATGAGCTGCCAGTCGTGCTAATCACTAAGTGCAGCGAAGAAAAGGCAAACTC
____________________________________________________________
consensus AGCGAATGATGAGCTGCCAGTCGTGCTAATCACTAAGTGCAGCGAAGAAAAGGCAAACTC