Contig 010745:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028K01Sequence661010745 (2)ref|XP_009795979.1|1e-78PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic
JMSF036O20Sequence644010745 (2)ref|XP_009795979.1|2e-79PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic753020464ref|XP_009602284.1|6e-123PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic

Alignment

This contig is upended


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JMSF028K01+                                                                      T
                      ____________________________________________________________
consensus                                                                        T
 
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JMSF036O20+            CTGAAGCCAAGATAGAGCATCGTCAAACAGGCCCTCTTTCCCAAACTGGGTGATCAGAG
JMSF028K01+           TCTGAAGCCAAGATAGAGCATCGTCAAACAGGCCNTCTTTCCCAAACTGGGTGATCAGAG
                      ____________________________________________________________
consensus             TCTGAAGCCAAGATAGAGCATCGTCAAACAGGCCCTCTTTCCCAAACTGGGTGATCAGAG
 
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JMSF036O20+           TGGAGTAAGTGTACTTATCGGGTGACAGCCCCCGTTGGCGCATTTCGTCGAACAGCCCAT
JMSF028K01+           TGGAGTAAGTGTACTTATCGGGTGACAGCCCCCGTTGGCGCATTTCGTCGAACAGCCCAT
                      ____________________________________________________________
consensus             TGGAGTAAGTGTACTTATCGGGTGACAGCCCCCGTTGGCGCATTTCGTCGAACAGCCCAT
 
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JMSF036O20+           AGGCGAGCTGCCATTGCTTCGCCCGGAGCACGTTACGCAGCACGACGTTGTACGCAAACA
JMSF028K01+           AGGCGAGCTGCCATTGCTTCGCCCGGAGCACGTTACGCAGCACGACGTTGTACGCAAACA
                      ____________________________________________________________
consensus             AGGCGAGCTGCCATTGCTTCGCCCGGAGCACGTTACGCAGCACGACGTTGTACGCAAACA
 
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JMSF036O20+           CGGAGGGAGTGTACAGAGCCTCTTCATTGATCCAATCGAGCAGCGCAAGCGAGCGTTGCC
JMSF028K01+           CGGAGGGAGTGTACAGAGCCTCTTCATTGATCCAATCGAGCAGCGCAAGCGAGCGTTGCC
                      ____________________________________________________________
consensus             CGGAGGGAGTGTACAGAGCCTCTTCATTGATCCAATCGAGCAGCGCAAGCGAGCGTTGCC
 
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JMSF036O20+           AGTCGGCTTCGCGCGAGAGGAGGGTGACCATGAACTTCATCGAAAGTGTTCGACCTTTGT
JMSF028K01+           AGTCGGCTTCGCGCGAGAGGAGGGTGACCATGAACTTCATCGAAAGTGTTCGACCTTTGT
                      ____________________________________________________________
consensus             AGTCGGCTTCGCGCGAGAGGAGGGTGACCATGAACTTCATCGAAAGTGTTCGACCTTTGT
 
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JMSF036O20+           ACGGCGACATCAAAGCGAAAAGCTCATGCTCGTTGCTTGCCTTGCTTATTGACAGTAGCA
JMSF028K01+           ACGGCGACATCAAAGCGAAAAGCTCATGCTCGTTGCTTGTCTTGCTTATTGACAGTAGCA
                      ____________________________________________________________
consensus             ACGGCGACATCAAAGCGAAAAGCTCATGCTCGTTGCTTGTCTTGCTTATTGACAGTAGCA
 
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JMSF036O20+           GCTCCTCCATGTCGACGCTGCTGTCCAAGAACGCCGGCAGCTGTTTCCGGCGGTACGGTG
JMSF028K01+           GCTCCTCCATGTCGACGCTGCTGTCCAAGAACGCCGGCAGCTGTTTCCGGCGGTACGGTG
                      ____________________________________________________________
consensus             GCTCCTCCATGTCGACGCTGCTGTCCAAGAACGCCGGCAGCTGTTTCCGGCGGTACGGTG
 
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JMSF036O20+           TGGTTCTTGGTGACGACGACGGCGGCGGCGGCGGCTCAGCCGTCCTCCTCCAGGCATCTT
JMSF028K01+           TGGTTCTTGGTGACGACGACGGCGGCGGCGGCGGCTCAGCCGTCCTCCTCCAGGCATCTT
                      ____________________________________________________________
consensus             TGGTTCTTGGTGACGACGACGGCGGCGGCGGCGGCTCAGCCGTCCTCCTCCAGGCATCTT
 
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JMSF036O20+           TTGACGAAGAAGTAGCGGAGATCGCCAATACGATGAAGTGGGTCCGAAGTTTCGCGGATT
JMSF028K01+           TTGACGAAGAAGTAGCGGAGATCGCCAATACGATGAAGTGGGTCCGAAATTTCGCGGATT
                      ____________________________________________________________
consensus             TTGACGAAGAAGTAGCGGAGATCGCCAATACGATGAAGTGGGTCCGAAGTTTCGCGGATT
 
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JMSF036O20+           TCTTACCAAGCACGGCGATTCCGGCACGGTTGTGTGGCAATGGTGAAGGTGTAATGGAGC
JMSF028K01+           TCTTACCAAGCACGGCGATTCCGGCACGGTTGTGTGGCAATGGTGAAGGTGTAATGGAGC
                      ____________________________________________________________
consensus             TCTTACCAAGCACGGCGATTCCGGCACGGTTGTGTGGCAATGGTGAAGGTGTAATGGAGC
 
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JMSF036O20+           ATACGTGTATGGAAATCGCGACAGAAAGCATTTCAAATCTTG                  
JMSF028K01+           ATACGTGTATGGAAATCGCGACAGAAAGCATTTCAAATCTTGTCTCCTCTGCTTTCGCCC
                      ____________________________________________________________
consensus             ATACGTGTATGGAAATCGCGACAGAAAGCATTTCAAATCTTGTCTCCTCTGCTTTCGCCC