clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF004C09 | Sequence | 309 | 010739 (5) | 438 | 005582 (23) | ref|XP_010483749.1| | 5e-28 | PREDICTED: protein COBRA-like [Camelina sativa] | |||
JMSF024E12 | Sequence | 688 | 010739 (5) | ref|XP_009800839.1| | 5e-46 | PREDICTED: F-box/LRR-repeat protein 3 [Nicotiana sylvestris] | 719 | 001377 (3) | emb|CDP19947.1| | 2e-86 | unnamed protein product [Coffea canephora] |
JMSF025P08 | Sequence | 681 | 010739 (5) | ref|XP_006363611.1| | 2e-61 | PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum] | 755 | 001377 (3) | emb|CDP19947.1| | 3e-94 | unnamed protein product [Coffea canephora] |
JMSF027L02 | Sequence | 686 | 010739 (5) | ref|XP_006363611.1| | 9e-60 | PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum] | 694 | 006139 (2) | emb|CDP01866.1| | 4e-72 | unnamed protein product [Coffea canephora] |
JMSF052F01 | Sequence | 688 | 010739 (5) | ref|XP_006363611.1| | 2e-61 | PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum] | 943 | 001377 (3) | emb|CDP19947.1| | 2e-109 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF025P08+ GACAGATCAATTTCCACCAAATTCCCG
JMSF024E12+ GACAGATCAATTTCCACCAAATTCCCG
JMSF052F01+ GCNTTGACAGATCAATTTCCACCAAATTCCCG
JMSF027L02+ GACAGATCAATTTCCACCAAATTCCCG
____________________________________________________________
consensus GCNTTGACAGATCAATTTCCACCAAATTCCCG
. : . : . : . : . : . :
JMSF025P08+ CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
JMSF024E12+ CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
JMSF052F01+ CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
JMSF027L02+ CAATTCGTCACCAANTTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
____________________________________________________________
consensus CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
. : . : . : . : . : . :
JMSF025P08+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
JMSF024E12+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
JMSF052F01+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
JMSF027L02+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
____________________________________________________________
consensus ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
. : . : . : . : . : . :
JMSF025P08+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
JMSF024E12+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGANGGGTATCTTTTGAGAATCTTTGT
JMSF052F01+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
JMSF027L02+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
____________________________________________________________
consensus CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
. : . : . : . : . : . :
JMSF025P08+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
JMSF024E12+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
JMSF052F01+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
JMSF027L02+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
____________________________________________________________
consensus CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
. : . : . : . : . : . :
JMSF025P08+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
JMSF024E12+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
JMSF052F01+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
JMSF027L02+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
____________________________________________________________
consensus TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
. : . : . : . : . : . :
JMSF025P08+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
JMSF024E12+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
JMSF004C09+ GGAGTCCATGCT
JMSF052F01+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
JMSF027L02+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
____________________________________________________________
consensus AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
. : . : . : . : . : . :
JMSF025P08+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF024E12+ GGANTTCTGCTTCTTCANTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF004C09+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF052F01+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF027L02+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
____________________________________________________________
consensus GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
. : . : . : . : . : . :
JMSF025P08+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF024E12+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF004C09+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF052F01+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF027L02+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
____________________________________________________________
consensus AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
. : . : . : . : . : . :
JMSF025P08+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
JMSF024E12+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGANGGTTCTGACGAAGAATTTATAGGTC
JMSF004C09+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
JMSF052F01+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
JMSF027L02+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
____________________________________________________________
consensus TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
. : . : . : . : . : . :
JMSF025P08+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF024E12+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF004C09+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF052F01+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF027L02+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
____________________________________________________________
consensus TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
. : . : . : . : . : . :
JMSF025P08+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAA
JMSF024E12+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTT
JMSF004C09+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTT
JMSF052F01+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTT
JMSF027L02+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTTAACC
____________________________________________________________
consensus GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTTAACC