Contig 010739:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004C09Sequence309010739 (5)438005582 (23)ref|XP_010483749.1|5e-28PREDICTED: protein COBRA-like [Camelina sativa]
JMSF024E12Sequence688010739 (5)ref|XP_009800839.1|5e-46PREDICTED: F-box/LRR-repeat protein 3 [Nicotiana sylvestris]719001377 (3)emb|CDP19947.1|2e-86unnamed protein product [Coffea canephora]
JMSF025P08Sequence681010739 (5)ref|XP_006363611.1|2e-61PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]755001377 (3)emb|CDP19947.1|3e-94unnamed protein product [Coffea canephora]
JMSF027L02Sequence686010739 (5)ref|XP_006363611.1|9e-60PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]694006139 (2)emb|CDP01866.1|4e-72unnamed protein product [Coffea canephora]
JMSF052F01Sequence688010739 (5)ref|XP_006363611.1|2e-61PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]943001377 (3)emb|CDP19947.1|2e-109unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF025P08+ GACAGATCAATTTCCACCAAATTCCCG
JMSF024E12+ GACAGATCAATTTCCACCAAATTCCCG
JMSF052F01+ GCNTTGACAGATCAATTTCCACCAAATTCCCG
JMSF027L02+ GACAGATCAATTTCCACCAAATTCCCG
                      ____________________________________________________________
consensus GCNTTGACAGATCAATTTCCACCAAATTCCCG
 
. : . : . : . : . : . :
JMSF025P08+ CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
JMSF024E12+ CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
JMSF052F01+ CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
JMSF027L02+ CAATTCGTCACCAANTTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
                      ____________________________________________________________
consensus CAATTCGTCACCAAATTCGACAGCCCCGCGTGGGTGAAGAACTTAGACCTAGACAGATTG
 
. : . : . : . : . : . :
JMSF025P08+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
JMSF024E12+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
JMSF052F01+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
JMSF027L02+ ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
                      ____________________________________________________________
consensus ATTGACCTCAACATTTCCCTGCAGAAACCGGCAATCACCGCGAGGGAATCGTCTGAAATC
 
. : . : . : . : . : . :
JMSF025P08+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
JMSF024E12+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGANGGGTATCTTTTGAGAATCTTTGT
JMSF052F01+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
JMSF027L02+ CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
                      ____________________________________________________________
consensus CTGGGACACAGGGAGAGATCCAGATGGGAAACGTGA-GGGTATCTTTTGAGAATCTTTGT
 
. : . : . : . : . : . :
JMSF025P08+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
JMSF024E12+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
JMSF052F01+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
JMSF027L02+ CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
                      ____________________________________________________________
consensus CAGCTGCTCCGACCGCATGGGCTTCAGCGCTTTTCTGTCGGAACACTCGGCGTTGTAGAA
 
. : . : . : . : . : . :
JMSF025P08+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
JMSF024E12+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
JMSF052F01+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
JMSF027L02+ TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
                      ____________________________________________________________
consensus TGCCTTGCAGACGAGAGAGAAGGATTTTCTGTCGGCTGGGTTTTCATTCAGGCAATCAAG
 
. : . : . : . : . : . :
JMSF025P08+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
JMSF024E12+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
JMSF004C09+ GGAGTCCATGCT
JMSF052F01+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
JMSF027L02+ AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
                      ____________________________________________________________
consensus AACCGTGAACAAAATCTCCTCGGAGAGACGATCAAAGTGGTTGAAACTGGAGTCCATGCT
 
. : . : . : . : . : . :
JMSF025P08+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF024E12+ GGANTTCTGCTTCTTCANTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF004C09+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF052F01+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
JMSF027L02+ GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
                      ____________________________________________________________
consensus GGATTTCTGCTTCTTCATTGCTGCAAAGATTGAACCTTTTCCGAACCCAACAGCAAAAAA
 
. : . : . : . : . : . :
JMSF025P08+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF024E12+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF004C09+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF052F01+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
JMSF027L02+ AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
                      ____________________________________________________________
consensus AGTCAACTTTGAGGCTTTTCTACATCTAAAACCCAAGATTTTGCTGCTTCAGCCTTGATT
 
. : . : . : . : . : . :
JMSF025P08+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
JMSF024E12+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGANGGTTCTGACGAAGAATTTATAGGTC
JMSF004C09+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
JMSF052F01+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
JMSF027L02+ TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
                      ____________________________________________________________
consensus TCCCGAGGAAGATCGAAAAGCCGAGAAGACTGGATGGTTCTGACGAAGAATTTATAGGTC
 
. : . : . : . : . : . :
JMSF025P08+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF024E12+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF004C09+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF052F01+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
JMSF027L02+ TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
                      ____________________________________________________________
consensus TTCTCGGGGGAGATATGAACTTTGAAGGCCCAGGCGATGAAGATACAGATTTCTTTTACT
 
. : . : . : . : . : . :
JMSF025P08+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAA
JMSF024E12+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTT
JMSF004C09+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTT
JMSF052F01+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTT
JMSF027L02+ GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTTAACC
                      ____________________________________________________________
consensus GAATACAAAGCTCCGATATCACCAAAAAATGTCTGGTAGATTAAGAAACAACCGTTAACC