| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011E23 | Sequence | 551 | 010722 (9) | 794 | 009693 (11) | gb|AAF14242.1|AF110226_1 | 6e-33 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMFF013J11 | Sequence | 516 | 010722 (9) | 794 | 009693 (11) | gb|AAF14242.1|AF110226_1 | 5e-33 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMFF021G07 | Sequence | 489 | 010722 (9) | 699 | 009693 (11) | gb|AAF14242.1|AF110226_1 | 1e-15 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMFF028B10 | Sequence | 515 | 010722 (9) | 756 | 009693 (11) | ref|XP_009613636.1| | 3e-29 | PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like isoform X2 [Nicotiana | |||
| JMFS116A01 | Sequence | 546 | 010722 (9) | ||||||||
| JMSF009N13 | Sequence | 330 | 010722 (9) | 765 | 009693 (11) | gb|AAF14242.1|AF110226_1 | 1e-33 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMSF012I23 | Sequence | 358 | 010722 (9) | 774 | 009693 (11) | gb|AAF14242.1|AF110226_1 | 7e-27 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMSF025G12 | Sequence | 575 | 010722 (9) | 799 | 009693 (11) | ref|XP_006362472.1| | 3e-38 | PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Solanum | |||
| JMSF040B11 | Sequence | 643 | 010722 (9) | 850 | 009693 (11) | gb|AAF14242.1|AF110226_1 | 3e-30 | nuclear RNA binding protein [Nicotiana tabacum] | |||
This contig is upended
. : . : . : . : . : . :
JMFS116A01+ CATTGCTGAAGC
____________________________________________________________
consensus CATTGCTGAAGC
. : . : . : . : . : . :
JMFS116A01+ CACCACGGCGACCACCACGGAAACCCCCACGAGGGCCACCCGGGCCACCATATCCTCCTC
JMSF040B11+ ACGGAAACCCCCACGAGGGCCACCCGGGCCACCATATCCTCCTC
____________________________________________________________
consensus CACCACGGCGACCACCACGGAAACCCCCACGAGGGCCACCCGGGCCACCATATCCTCCTC
. : . : . : . : . : . :
JMFS116A01+ GCCTTTCAAAATTCCTTTCACCTTCCCCATCTCCTGAATTCCTGTACCCTCCAGAATATC
JMSF040B11+ GCCTTTCAAAATTCCTTTCACCTTCCCCATCTCCTGAATTCCTGTACCCTCCAGAATATC
JMFF011E23+ CCTCCAGAATATC
JMSF025G12+ CCCCATCTCCTGAATTCCTGTACCCTCCAGAATATC
____________________________________________________________
consensus GCCTTTCAAAATTCCTTTCACCTTCCCCATCTCCTGAATTCCTGTACCCTCCAGAATATC
. : . : . : . : . : . :
JMFS116A01+ CATTATTACCATAGGGATTCGGATTCTCATTATCAGCAGACTCCTGATTAAAACCACGCC
JMSF040B11+ CATTATTACCATAGGGATTCGGATTCTCATTATCAGCAGACTCCTGATTAAAACCACGCC
JMFF028B10+ TTCTCATTATCAGCAGACTCCTGATTAAAACCACGCC
JMFF011E23+ CATTATTACCATAGGGATTCGGATTCTCATTATCAGCAGACTCCTGATTAAAACCACGCC
JMFF021G07+ AAAACCACGCC
JMFF013J11+ ATTCTCATTATCAGCAGACTCCTGATTAAAACCACGCC
JMSF025G12+ CATTATTACCATAGGGATTCGGATTCTCATTATCAGCAGACTCCTGATTAAAACCACGCC
____________________________________________________________
consensus CATTATTACCATAGGGATTCGGATTCTCATTATCAGCAGACTCCTGATTAAAACCACGCC
. : . : . : . : . : . :
JMFS116A01+ CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
JMSF040B11+ CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
JMFF028B10+ CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
JMFF011E23+ CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
JMFF021G07+ CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
JMFF013J11+ CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
JMSF025G12+ CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
____________________________________________________________
consensus CACGGCCACCACCACGTCCTCGGCCACCTCCACGTCCACCCCGGCCATCTCCTCGCTGAA
. : . : . : . : . : . :
JMFS116A01+ AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
JMSF040B11+ AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
JMFF028B10+ AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
JMFF011E23+ AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
JMFF021G07+ AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
JMSF012I23+ GG
JMFF013J11+ AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
JMSF025G12+ AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
____________________________________________________________
consensus AGTCAGTCTTAGCCTCCCTCACAGCCTGAGCTGGAGGGAGTGGTTTGGAGGGCATCTTGG
. : . : . : . : . : . :
JMFS116A01+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMSF040B11+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMFF028B10+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMFF011E23+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMFF021G07+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMSF012I23+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMSF009N13+ TGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMFF013J11+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
JMSF025G12+ ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
____________________________________________________________
consensus ACCCGGCGGCCGGTTTAGCCGCCGGAGCCTGAGCGGCGGACTTCTTCTGATCAGCTGAAG
. : . : . : . : . : . :
JMFS116A01+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMSF040B11+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMFF028B10+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMFF011E23+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMFF021G07+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMSF012I23+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMSF009N13+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMFF013J11+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
JMSF025G12+ GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
____________________________________________________________
consensus GCGGTGGCAGCTTGTGCTGCTGAGCAGCGATGAGCTGTGATACGTCGTCGGTGTCATCGT
. : . : . : . : . : . :
JMFS116A01+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMSF040B11+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMFF028B10+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMFF011E23+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMFF021G07+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMSF012I23+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMSF009N13+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMFF013J11+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
JMSF025G12+ CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
____________________________________________________________
consensus CACCCAAAAGGTCAAAAGGGTTCATGGTGGCCATCTCTTTCGCTGTTATTTCTTCGTTTT
. : . : . : . : . : . :
JMFS116A01+ CCGGGCTTTAGATACGCATCTGTGTCCTGAAAACGAAGAAATAACAGCGAAAGA
JMSF040B11+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
JMFF028B10+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
JMFF011E23+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
JMFF021G07+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
JMSF012I23+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
JMSF009N13+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
JMFF013J11+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
JMSF025G12+ CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
____________________________________________________________
consensus CAGGAC-ACAGATGCGTATCTAAAGCCCGGAGCTTTGTCGGAGATTCCGAACAATCAAGG
. : . : . : . : . : . :
JMSF040B11+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
JMFF028B10+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
JMFF011E23+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
JMFF021G07+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
JMSF012I23+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
JMSF009N13+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
JMFF013J11+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
JMSF025G12+ AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
____________________________________________________________
consensus AAGCCCTAGTTATTAGAATCCATGGAAACGTATTGGCAGAGTACAGAGCTAGGGATTGTG
. : . : . : . : . : . :
JMSF040B11+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGGCGAT
JMFF028B10+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGCCGAT
JMFF011E23+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGCCGAT
JMFF021G07+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGGCGAT
JMSF012I23+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGGC
JMSF009N13+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGGCG
JMFF013J11+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGGCGAT
JMSF025G12+ TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGGCGATC
____________________________________________________________
consensus TAGATAGATAGAGAAAAAAGGGAAATTCTTAAAACCCTAGCGAGTGAAGTGGAGGCGATC