Contig 010719:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025A02Sequence633010719 (2)ref|XP_009759815.1|4e-43PREDICTED: three prime repair exonuclease 2 [Nicotiana sylvestris]749010719 (2)ref|XP_006344720.1|2e-80PREDICTED: three prime repair exonuclease 2-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF025A02-                             ATTTACAATTCACAATTTACAGCAGGTGAGTGCTTGGATGA
                      ____________________________________________________________
consensus                                ATTTACAATTCACAATTTACAGCAGGTGAGTGCTTGGATGA
 
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rJMSF025A02-          ATTGTTCTTCTTGTTTTTTGAATTGCCTACTTCTGAGAACCAAACTGAATGCTCTCCAAC
                      ____________________________________________________________
consensus             ATTGTTCTTCTTGTTTTTTGAATTGCCTACTTCTGAGAACCAAACTGAATGCTCTCCAAC
 
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rJMSF025A02-          GAGCTCAGATAACGTCAGTTTCAGCTCAAAACTCAGGATTTGGAAAACCATTGTCAACAA
                      ____________________________________________________________
consensus             GAGCTCAGATAACGTCAGTTTCAGCTCAAAACTCAGGATTTGGAAAACCATTGTCAACAA
 
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rJMSF025A02-          GTTCACGTCTGACATCGCTCTATGTGCACTCCCATCTAATGGGATCTTGTAGTGTTCCCT
                      ____________________________________________________________
consensus             GTTCACGTCTGACATCGCTCTATGTGCACTCCCATCTAATGGGATCTTGTAGTGTTCCCT
 
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rJMSF025A02-          CAAGACTTGCAATTTTACTTTTGGTGTGGGGCCCCCCTTTGATCCTCCTCCATATTTCTT
                      ____________________________________________________________
consensus             CAAGACTTGCAATTTTACTTTTGGTGTGGGGCCCCCCTTTGATCCTCCTCCATATTTCTT
 
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rJMSF025A02-          CATCGCTTCACGAGCCAGAGGGAGAGTGTCGATAAACAGCCAGTTTGAAGGAATTGAGTA
                      ____________________________________________________________
consensus             CATCGCTTCACGAGCCAGAGGGAGAGTGTCGATAAACAGCCAGTTTGAAGGAATTGAGTA
 
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rJMSF025A02-          AGAACATCGTCTAAGTTCACTGATTAGAAAAGGAACATCAAAAGTGCGAGCATTGTGAGC
                      ____________________________________________________________
consensus             AGAACATCGTCTAAGTTCACTGATTAGAAAAGGAACATCAAAAGTGCGAGCATTGTGAGC
 
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rJMSF025A02-          GATCCACACTACATATCCACCGGGTTTCTGCCGGCTTCTTACATATTGCAACAAGATGGG
                      ____________________________________________________________
consensus             GATCCACACTACATATCCACCGGGTTTCTGCCGGCTTCTTACATATTGCAACAAGATGGG
 
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rJMSF025A02-          AATTAGGTCCTCCATCCATTTGTGTTGAAATCCCATGGATATGTTCATTAAGCACATCAC
                      ____________________________________________________________
consensus             AATTAGGTCCTCCATCCATTTGTGTTGAAATCCCATGGATATGTTCATTAAGCACATCAC
 
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rJMSF025A02-          GTCCAGGATTGACAAGAGTCTGAAAAGTACTATTTTCACCTCCACCAAGGTCCCTTAATG
                      ____________________________________________________________
consensus             GTCCAGGATTGACAAGAGTCTGAAAAGTACTATTTTCACCTCCACCAAGGTCCCTTAATG
 
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rJMSF025A02-          CAATCTCAATAATCCGTTCATTTTCTCTGCTAAACCCAGTGGTCTCAATATCAAAAACAA
JMSF025A02+                                      TGCTAAACCCAGTGGTCTCAATATCAAAAACAA
                      ____________________________________________________________
consensus             CAATCTCAATAATCCGTTCATTTTCTCTGCTAAACCCAGTGGTCTCAATATCAAAAACAA
 
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rJMSF025A02-          TCAAAGTTACAAGTTTAGCTAATTCTTTGTTTTCAACAATCTTTTGCCGAATATCATGGT
JMSF025A02+           TCAAAGTTACAAGTTTAGCTAATTCTTTGTTTTCAACAATCTTTTGCCGAATATCATGGT
                      ____________________________________________________________
consensus             TCAAAGTTACAAGTTTAGCTAATTCTTTGTTTTCAACAATCTTTTGCCGAATATCATGGT
 
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rJMSF025A02-          ATTCAATTGTTTCAAGTTCAGTTATTTCTGATTTATATGCATCTACCT            
JMSF025A02+           ATTCAATTGTTTCAAGTTCAGTTATTTCTGATTTATATGCATCTACCTTAGATACATTAA
                      ____________________________________________________________
consensus             ATTCAATTGTTTCAAGTTCAGTTATTTCTGATTTATATGCATCTACCTTAGATACATTAA
 
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JMSF025A02+           TTTCATCTGATATCTCATGTCTAAAAGTTGTTTTGGTGCATAAACTATCCTTCGCTTTTC
                      ____________________________________________________________
consensus             TTTCATCTGATATCTCATGTCTAAAAGTTGTTTTGGTGCATAAACTATCCTTCGCTTTTC
 
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JMSF025A02+           CTTTGTATTGGGTAGTTAGGGTGTATCTTCTATTCTCAGCCCTATTATATCTACTGTCTG
                      ____________________________________________________________
consensus             CTTTGTATTGGGTAGTTAGGGTGTATCTTCTATTCTCAGCCCTATTATATCTACTGTCTG
 
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JMSF025A02+           CTCCATATTTATGAGAAGCAAGAACCTTGAATCTAAAACTAACCCTGTCACTCTTACTGA
                      ____________________________________________________________
consensus             CTCCATATTTATGAGAAGCAAGAACCTTGAATCTAAAACTAACCCTGTCACTCTTACTGA
 
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JMSF025A02+           AATGATGGAAACCTTGCCACCAAGAACAGGCTAAGGTATAAACTCTACATTGAGGAGACA
                      ____________________________________________________________
consensus             AATGATGGAAACCTTGCCACCAAGAACAGGCTAAGGTATAAACTCTACATTGAGGAGACA
 
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JMSF025A02+           TTATAAGTGGGAAGAACATTCTAACTACACTAATTTGAATTCAACAAAGTATGGTGAAGC
                      ____________________________________________________________
consensus             TTATAAGTGGGAAGAACATTCTAACTACACTAATTTGAATTCAACAAAGTATGGTGAAGC
 
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JMSF025A02+           AACTGGAATCAACCTGGTACTGATTCCAAAATAGAAAGCAATCACTCATTCACACTTTTC
                      ____________________________________________________________
consensus             AACTGGAATCAACCTGGTACTGATTCCAAAATAGAAAGCAATCACTCATTCACACTTTTC
 
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JMSF025A02+           TTTGATTGTATGTTGAGTGTATACAGAAAAGAATGCGAACATGAAATACAGTGACGAGCA
                      ____________________________________________________________
consensus             TTTGATTGTATGTTGAGTGTATACAGAAAAGAATGCGAACATGAAATACAGTGACGAGCA
 
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JMSF025A02+           GGAGAGCATTTAGGGGTCTCTCTCACCCCAAAAATGGCATAAAGTGCGGATACCAGTCCC
                      ____________________________________________________________
consensus             GGAGAGCATTTAGGGGTCTCTCTCACCCCAAAAATGGCATAAAGTGCGGATACCAGTCCC