Contig 010716:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF024J16-                                                        TTAGCATAATCAAC
                      ____________________________________________________________
consensus                                                           TTAGCATAATCAAC
 
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rJMSF024J16-          TAGCTTAACAACTCTTCAGTTTCACCTTTTATTTTATAACTTTTCAGATACTTTTCAACT
rJMFF015L10-                                  CCTTTTATTTTATAACTTTTCAGATACTTTTCAACT
                      ____________________________________________________________
consensus             TAGCTTAACAACTCTTCAGTTTCACCTTTTATTTTATAACTTTTCAGATACTTTTCAACT
 
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rJMSF024J16-          AAGTTTACTAAACATAGCCAATGTAACTAATTACACGAAACGGGTGATGTTTCTTTTAAT
rJMFF015L10-          AAGTTTACTAAACATAGCCAATGTAACTAATTACACGAAACGGGTGATGTTTCTTTTAAT
                      ____________________________________________________________
consensus             AAGTTTACTAAACATAGCCAATGTAACTAATTACACGAAACGGGTGATGTTTCTTTTAAT
 
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rJMSF024J16-          CGTTTTGAACCATGGTTCACAGTAAAATTTGCCGTTTTGCCATTAGTCGCTCAATCTGTG
rJMFF015L10-          CGTTTTGAACCATGGTTCACAGTAAAATTTGCCGTTTTGCCATTAGTCGCTCAATCTGTG
                      ____________________________________________________________
consensus             CGTTTTGAACCATGGTTCACAGTAAAATTTGCCGTTTTGCCATTAGTCGCTCAATCTGTG
 
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rJMSF024J16-          AAAAACACGAACTTGTAATCCCCCGTCAATGTGAAGATTGATCATAGTCCTGTAGTTAAC
rJMFF015L10-          AAAAACACGAACTTGTAATCCCCCGTCAATGTGAAGATTGATCATAGTCCTGTAGTTAAC
                      ____________________________________________________________
consensus             AAAAACACGAACTTGTAATCCCCCGTCAATGTGAAGATTGATCATAGTCCTGTAGTTAAC
 
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rJMSF024J16-          AGCTTTCCTTTCATCAGCCAGCTTGAAACCAAAGAACCGTAAAAGAACTGCAGAGAAGAT
rJMFF015L10-          AGCTTTCCTTTCATCAGCCAGCTTGAAACCAAAGAACCGTAAAAGAACTGCAGAGAAGAT
                      ____________________________________________________________
consensus             AGCTTTCCTTTCATCAGCCAGCTTGAAACCAAAGAACCGTAAAAGAACTGCAGAGAAGAT
 
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rJMSF024J16-          CTTCATTTGCCTGTACGCAAACTCCTTTCCCAGACATATCCGCGGCCCAGCCTGAAAAGC
rJMFF015L10-          CTTCATTTGCCTGTACGCAAACTCCTTTCCCAGACATATCCGCGGCCCAGCCTGAAAAGC
                      ____________________________________________________________
consensus             CTTCATTTGCCTGTACGCAAACTCCTTTCCCAGACATATCCGCGGCCCAGCCTGAAAAGC
 
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rJMSF024J16-          TGTCAATTTGAAGGGGCTCTCAGGCCTGAAACAGCCATTCTCGTCTAGCCATCTCTCGGG
rJMFF015L10-          TGTCAATTTGAAGGGGCTCTCAGGCCTGAAACAGCCATTCTCGTCTAGCCATCTCTCGGG
                      ____________________________________________________________
consensus             TGTCAATTTGAAGGGGCTCTCAGGCCTGAAACAGCCATTCTCGTCTAGCCATCTCTCGGG
 
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rJMSF024J16-          CTTAAATTCTTCTGCATCATCGCCCCATATAAACCGCATTCTCCCCATTGCATATGGTTG
rJMFF015L10-          CTTAAATTCTTCTGCATCATCGCCCCATATAAACCGCATTCTCCCCATTGCATATGGTTG
                      ____________________________________________________________
consensus             CTTAAATTCTTCTGCATCATCGCCCCATATAAACCGCATTCTCCCCATTGCATATGGTTG
 
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rJMSF024J16-          GTAAGCCACCATATCACCTTTCTTCACACTAAACCCATCCGGTAACGTGTCGTCTGAAAA
rJMFF015L10-          GTAAGCCACCATATCACCTTTCTTCACACTAAACCCATCCGGTAACGTGTCGTCTGAAAA
JMFN006L21+                                  TCACACTAAACCCATCCGGTAACGTGTCGTCTGAAAA
                      ____________________________________________________________
consensus             GTAAGCCACCATATCACCTTTCTTCACACTAAACCCATCCGGTAACGTGTCGTCTGAAAA
 
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rJMSF024J16-          ACTTATTTTTGCATCCACAGGAACTGCAGGATAAAGCCTGAGAGTCTCAGTCAATGCAGC
rJMFF015L10-          ACTTATTTTTGCATCCACAGGAACTGCAGGATAAAGCCTGAGAGTCTCAGTCAATGCAGC
JMFN006L21+           ACTTATTTTTGCATCCACAGGAACTGCAGGATAAAGCCTGAGAGTCTCAGTCAATGCAGC
                      ____________________________________________________________
consensus             ACTTATTTTTGCATCCACAGGAACTGCAGGATAAAGCCTGAGAGTCTCAGTCAATGCAGC
 
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rJMSF024J16-          ATGAAGGTATGGCATATTCTCCAGGGCTTCTTCTCTCAAATTGGCAGCAAAATGAGCAAA
rJMFF015L10-          ATGAAGGTATGGCATATTCTCCAGGGCTTCTTCTCTCAAATTGGCAGCAAAATGAGCAAA
JMFN006L21+           ATGAAGGTATGGCATATTCTCCAGGGCTTCTTCTCTCAAATTGGCAGCAAAATGAGCAAA
                      ____________________________________________________________
consensus             ATGAAGGTATGGCATATTCTCCAGGGCTTCTTCTCTCAAATTGGCAGCAAAATGAGCAAA
 
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rJMSF024J16-          GTTTCTTGCATCTGCCGTCTTTGTTGCTTCTTGTATCTCTNGCACGATTTTTTCCTGTAC
rJMFF015L10-          GTTTCTTGCATCTGCCGTCTTTGTTGCTTCTTGTATCTCTTGCACGATTTTTTCCTGTAC
JMFN006L21+           GTTTCTTGCATCTGCCGTCTTTGTTGCTTCTTGTATCTCTTGCACGATTTTTTCCTGTAC
                      ____________________________________________________________
consensus             GTTTCTTGCATCTGCCGTCTTTGTTGCTTCTTGTATCTCTTGCACGATTTTTTCCTGTAC
 
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rJMSF024J16-          GAGTGGATGCTTGCAAAGCATATATATAAACC                            
rJMFF015L10-          GAGTGGATGCTTGCAAAGCATATATATAAACCAGGCTAGAGTTACTGCTGGTGTGTCTTT
JMFN006L21+           GAGTGGATGCTTGCAAAGCATATATATAAACCAGGCTAGAGTTACTGCTGTTGTGTCTTT
                      ____________________________________________________________
consensus             GAGTGGATGCTTGCAAAGCATATATATAAACCAGGCTAGAGTTACTGCTGTTGTGTCTTT
 
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rJMFF015L10-          GCC                                                         
JMFN006L21+           GCCAGCAATTACAAAGTTCAGTATTATATCTCGCAAGTACTTTGGTTCTGTCTCAGTCAA
                      ____________________________________________________________
consensus             GCCAGCAATTACAAAGTTCAGTATTATATCTCGCAAGTACTTTGGTTCTGTCTCAGTCAA
 
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JMFN006L21+           CTGTAGAAACCTCGATAAAATGTCTTCTTTCTTCCAGCTCAATGAGGAATCATCCCGGGC
                      ____________________________________________________________
consensus             CTGTAGAAACCTCGATAAAATGTCTTCTTTCTTCCAGCTCAATGAGGAATCATCCCGGGC
 
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JMFN006L21+           ATTATGCATTTGCTCGATCTTGCTTTGAATTAGCTTGAACACGAAGTCATTAACGATTTG
                      ____________________________________________________________
consensus             ATTATGCATTTGCTCGATCTTGCTTTGAATTAGCTTGAACACGAAGTCATTAACGATTTG
 
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JMFN006L21+           GATACTTTTCTTTAACTTGGCTTCTGACCCAATATTGAGAGCCTTTTTGAGCTTCCAAAA
                      ____________________________________________________________
consensus             GATACTTTTCTTTAACTTGGCTTCTGACCCAATATTGAGAGCCTTTTTGAGCTTCCAAAA
 
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JMFN006L21+           GATATCAACATATCTCCAAAGTGTCATTGCACTTGCATCATCAAACGCGGCGTTGAACTT
                      ____________________________________________________________
consensus             GATATCAACATATCTCCAAAGTGTCATTGCACTTGCATCATCAAACGCGGCGTTGAACTT
 
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JMFN006L21+           GGCGCCTTCTTCACTCGAACCACACATGCTATCCAGTTCAACTCCAAACGCAACTCTAAA
JMSF024J16+                      CACTCGAACCACACATGCTATCCAGTTCAACTCCAAACGCAACTCTAAA
                      ____________________________________________________________
consensus             GGCGCCTTCTTCACTCGAACCACACATGCTATCCAGTTCAACTCCAAACGCAACTCTAAA
 
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JMFF015L10+                                                     AACTGTGTTCTTGAAATC
JMSF024J16+           TATCGAGTCTAAAGTCGATTTCATGAACAAATCATGGATATCAACTGTGTTCTTGAAATC
                      ____________________________________________________________
consensus             TATCGAGTCTAAAGTCGATTTCATGAACAAATCATGGATATCAACTGTGTTCTTGAAATC
 
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JMFF015L10+           TGCAACTTTAGACAAAATGTTAGCAAGCTTCACAACGTTTCTTCTAAAGATCACACTGCT
JMSF024J16+           TGCAACTTTAGACAAAATGTTAGCAAGCTTCACAACGTTTCTTCTAAAGATCACACTGCT
                      ____________________________________________________________
consensus             TGCAACTTTAGACAAAATGTTAGCAAGCTTCACAACGTTTCTTCTAAAGATCACACTGCT
 
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JMFF015L10+           AAAATCTCTTAACACTCTTGTAGAAAACTCGTGGCTCGATAACTTCCTCTGCTCTTTCCA
JMSF024J16+           AAAATCTCTTAACACTCTTGTAGAAAACTCGTGGCTCGATAACTTCCTCTGCTCTTTCCA
                      ____________________________________________________________
consensus             AAAATCTCTTAACACTCTTGTAGAAAACTCGTGGCTCGATAACTTCCTCTGCTCTTTCCA
 
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JMFF015L10+           CTTAATACCATCAACTGCAAAAATCCCATCTCCTAACAAGTCCTTCAGAATGGTATAGTT
JMSF024J16+           CTTAATACCATCAACTGCAAAAATCCCATCTCCTAACAAGTCCTTCAGAATGGTATAGTT
                      ____________________________________________________________
consensus             CTTAATACCATCAACTGCAAAAATCCCATCTCCTAACAAGTCCTTCAGAATGGTATAGTT
 
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JMFF015L10+           GTGACCCCCCTTGCCATAGTTGTCAAAGTTGGTTTTGAGAATATACTCAACGTTAACCGG
JMSF024J16+           GTGACCCCCCTTGCCATAGTTGTCAAAGTTGGTTTTGAGAATATACTCAACGTTAACCGG
                      ____________________________________________________________
consensus             GTGACCCCCCTTGCCATAGTTGTCAAAGTTGGTTTTGAGAATATACTCAACGTTAACCGG
 
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JMFF015L10+           GTCGGAGGTATAAATCTCATTCCGGAAAGGGCTGATTAGCCGGTAAGTTCTGTACTTTCC
JMSF024J16+           GTCGGAGGTATAAATCTCATTCCGGAAAGGGCTGATTAGCCGGTAAGTTCTGTACTTTCC
                      ____________________________________________________________
consensus             GTCGGAGGTATAAATCTCATTCCGGAAAGGGCTGATTAGCCGGTAAGTTCTGTACTTTCC
 
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JMFF015L10+           GGCGAGATCCGTCATGTAATGGTGCAGCCTATGGAAGTTGATCAGCTGGTGGAAAACAGT
JMSF024J16+           GGCGAGATCCGTCATGTAATGGTGCAGCCTATGGAAGTTGATCAGCTGGTGGAAAACAGT
                      ____________________________________________________________
consensus             GGCGAGATCCGTCATGTAATGGTGCAGCCTATGGAAGTTGATCAGCTGGTGGAAAACAGT
 
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JMFF015L10+           GCCGCCAACCGGGTGGTATTTCTTCGCCGCCGTCTTCTTCCTCCCATCCTCGCCGCCCTG
JMSF024J16+           GCCGCCAACCGGGTGGTATTTCTTCGCCGCCGTCTTCTTCCTCCCATCCTCGCCGCCCTG
                      ____________________________________________________________
consensus             GCCGCCAACCGGGTGGTATTTCTTCGCCGCCGTCTTCTTCCTCCCATCCTCGCCGCCCTG
 
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JMFF015L10+           CAACTTTCCGACCAGGAAGCGCAGCAAGGCTGCAGAAATAACGGCAACAGAAAGCAAGGC
JMSF024J16+           CAACTTTCCGACCAGGAAGCGCAGCAAGGCTGCAGAAATAACGGCAACAGAAAGCAAGGC
                      ____________________________________________________________
consensus             CAACTTTCCGACCAGGAAGCGCAGCAAGGCTGCAGAAATAACGGCAACAGAAAGCAAGGC
 
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JMFF015L10+           CACTGCAATGGAGATTTGAAGAGGTTCCAAGCCTGCAATCATGTTTAGGGGCATCTT   
JMSF024J16+           CACTGCAATGGAGATTTGAAGAGGTTCCAAGCCTGCAATCATGTTTAGGGGCATCTTATC
                      ____________________________________________________________
consensus             CACTGCAATGGAGATTTGAAGAGGTTCCAAGCCTGCAATCATGTTTAGGGGCATCTTATC