| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023L24 | Sequence | 693 | 010708 (3) | ref|XP_006368037.1| | 1e-61 | PREDICTED: aspartic proteinase-like protein 1-like [Solanum tuberosum] | 757 | 001443 (3) | ref|XP_009804210.1| | 4e-83 | PREDICTED: aspartic proteinase-like protein 1 isoform X2 [Nicotiana sylvestris] |
| JMSF027P23 | Sequence | 665 | 010708 (3) | ref|XP_006368037.1| | 3e-62 | PREDICTED: aspartic proteinase-like protein 1-like [Solanum tuberosum] | 640 | 001443 (3) | ref|XP_009804210.1| | 9e-71 | PREDICTED: aspartic proteinase-like protein 1 isoform X2 [Nicotiana sylvestris] |
| JMSF039A08 | Sequence | 694 | 010708 (3) | ref|XP_009804209.1| | 8e-72 | PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Nicotiana sylvestris] | 825 | 001443 (3) | ref|XP_009606652.1| | 8e-102 | PREDICTED: aspartic proteinase-like protein 1 isoform X2 [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
JMSF027P23+ AAGGAAGNTGCTTGCT
____________________________________________________________
consensus AAGGAAGNTGCTTGCT
. : . : . : . : . : . :
JMSF027P23+ GGTGCTAGATCGGGCTGGACTATACTCGTTCAGATCCCTATCCTGCATAATAGATGCCCC
____________________________________________________________
consensus GGTGCTAGATCGGGCTGGACTATACTCGTTCAGATCCCTATCCTGCATAATAGATGCCCC
. : . : . : . : . : . :
JMSF027P23+ AAACAGGAGGGAGCACCAAGACAGTGTAGTAGCTTGAGGACAATGGAGCACACTGTACAC
JMSF039A08+ CCAAGACAGTGTAGTAGCTTGAGGACAATGGAGCACACTGTACAC
JMSF023L24+ TAGTAGCTTGAGGACAATGGAGCACACTGTACAC
____________________________________________________________
consensus AAACAGGAGGGAGCACCAAGACAGTGTAGTAGCTTGAGGACAATGGAGCACACTGTACAC
. : . : . : . : . : . :
JMSF027P23+ AATCACAAGGAACCCAAAGCAAATCACTTCCAGCATCTAACGCAACAAGAAATGAAACAT
JMSF039A08+ AATCACAAGGAACCCAAAGCAAATCACTTCCAGCATCTAACGCAACAAGAAATGAAACAT
JMSF023L24+ AATCACAAGGAACCCAAAGCAAATCACTTCCAGCATCTAACGCAACAAGAAATGAAACAT
____________________________________________________________
consensus AATCACAAGGAACCCAAAGCAAATCACTTCCAGCATCTAACGCAACAAGAAATGAAACAT
. : . : . : . : . : . :
JMSF027P23+ TTGGTGTCCCAATATCAATCCATGCATAATGCAACCAGCTCAAGTCATTGCCGTAGTCAA
JMSF039A08+ TTGGTGTCCCAATATCAATCCATGCATAATGCAACCAGCTCAAGTCATTGCCGTAGTCAA
JMSF023L24+ TTGGTGTCCCAATATCAATCCATGCATAATGCAACCAGCTCAAGTCATTGCCGTAGTCAA
____________________________________________________________
consensus TTGGTGTCCCAATATCAATCCATGCATAATGCAACCAGCTCAAGTCATTGCCGTAGTCAA
. : . : . : . : . : . :
JMSF027P23+ AGGTCTGACTTCCTTCGGAAGGAACAAGGAGCTGTTTCTGAGAGCCAAGCCTCAGCCTCT
JMSF039A08+ AGGTCTGACTTCCTTCGGAAGGAACAAGGAGCTGTTTCTGAGAGCCAAGCCTCAGCCTCT
JMSF023L24+ AGGTCTGACTTCCTTCGGAAGGAACAAGGAGCTGTTTCTGAGAGCCAAGCCTCAGCCTCT
____________________________________________________________
consensus AGGTCTGACTTCCTTCGGAAGGAACAAGGAGCTGTTTCTGAGAGCCAAGCCTCAGCCTCT
. : . : . : . : . : . :
JMSF027P23+ GGTGCTTAAAGTCGATGCTGAGGAGCAACCTTGCTCGCTCCACGCTCTCTCGCTCCGGCC
JMSF039A08+ GGTGCTTAAAGTCGCTGCTGAGGAGCAACCTTGCTCGCTCCACGCTCTCTCGCTCCGACC
JMSF023L24+ GGTGCTTAAAGTCGCTGCTGAGGAGCAACCTTGCTCGCTCCACGCTCTCTCGCTCCGGCC
____________________________________________________________
consensus GGTGCTTAAAGTCGCTGCTGAGGAGCAACCTTGCTCGCTCCACGCTCTCTCGCTCCGGCC
. : . : . : . : . : . :
JMSF027P23+ ACGGCCCTTGTCTCCCCTTCGCCGCCCAAACTGAACGCGCTTCGTCGGAGAACCTGTGAA
JMSF039A08+ ACGGCCCTTGTCTCCCCTTCGCCGCCCAAACTGAACGCGCTTCGTCGGAGAACCTGTGAA
JMSF023L24+ ACGGCCCTTGTCTCCCCTTCGCCGCCCAAACTGAACGCGCTTCGTCGGAGAACCTGTGAA
____________________________________________________________
consensus ACGGCCCTTGTCTCCCCTTCGCCGCCCAAACTGAACGCGCTTCGTCGGAGAACCTGTGAA
. : . : . : . : . : . :
JMSF027P23+ TCAGCCGGAAGGAGTAGGTCGCTCCCGCGCAGACCCCAATGCAGATTAGCACCGCCGCTA
JMSF039A08+ TCAGCCGGAAGGAGTAGGTCGCTCCCGCGCAGACCTCAATGCAGATTAGCACCGCCGCTA
JMSF023L24+ TCAGCCGGAAGGAGTAGGTCGCTCCCGCGCAGACCTCAATGCAGATTAGCACCGCCGCTA
____________________________________________________________
consensus TCAGCCGGAAGGAGTAGGTCGCTCCCGCGCAGACCTCAATGCAGATTAGCACCGCCGCTA
. : . : . : . : . : . :
JMSF027P23+ GTGTGAACAGAATCGCCGCAACCCCGGTCCTCATTGCGAGGCAAAAGGCAGATTGGAGAG
JMSF039A08+ GTGTGAACAGAATCGCCGCAACCCCGGTCCTCATTGCGAGGCAAAAGGCAGATTGGAGAG
JMSF023L24+ GTGTGAACAGAATCGCCGCAA-CCCGGTCCTCATTGCGAGGCAAAAGGCAGATTGGAGAG
____________________________________________________________
consensus GTGTGAACAGAATCGCCGCAACCCCGGTCCTCATTGCGAGGCAAAAGGCAGATTGGAGAG
. : . : . : . : . : . :
JMSF027P23+ AGCGAAAGCGGAAGCGAACCCTAGGTATTGGGCTCAAGAATAAGAGCGCAGAGTCACTGA
JMSF039A08+ AGCGAAAGCGGAAGCGAACCCTAGGTATTGGGCTCAAGAATAAGAGCGCAGAGTCACTGA
JMSF023L24+ AGCGAAAGCGGAAGCGAACCCTAGGTATTGGGCTCAAGAATAAGAGCGCAGAGTCACTGA
____________________________________________________________
consensus AGCGAAAGCGGAAGCGAACCCTAGGTATTGGGCTCAAGAATAAGAGCGCAGAGTCACTGA
. : . : . : . : . : . :
JMSF027P23+ GTCGGAGAGTTTTGAGCAACGATTTCTACTTTGCAGAGAGTGGGAAGT
JMSF039A08+ GTCGGAGAGTTTTGAGCAACGATTTCTACTTTGCAGAGAGTGGGAAGTGAAATCTCCATT
JMSF023L24+ GTCGGAGAGTTTTGAGCAACGATTTCTACTTTGCAGAGAGTGGGAAGTGAAATCTCCATT
____________________________________________________________
consensus GTCGGAGAGTTTTGAGCAACGATTTCTACTTTGCAGAGAGTGGGAAGTGAAATCTCCATT
. : . : . : . : . : . :
JMSF039A08+ GCAGAAAGTGATTATCAAGGATTTCCTTCTCTTTTTTATGTTTTGTTT
JMSF023L24+ GCAGAAAGTGATTATCAAGGATTTCCTTCTCTTTTTTATGTTTTGTTTATTTCAACCTGT
____________________________________________________________
consensus GCAGAAAGTGATTATCAAGGATTTCCTTCTCTTTTTTATGTTTTGTTTATTTCAACCTGT
. : . : . : . : . : . :
JMSF023L24+ GGCTATTTTAGCAATTTCTTCAATTTCTAGCATTGCGTTTATGTTTGCATATACTCCGTC
____________________________________________________________
consensus GGCTATTTTAGCAATTTCTTCAATTTCTAGCATTGCGTTTATGTTTGCATATACTCCGTC