Contig 010703:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-                                                                  AAGT
                      ____________________________________________________________
consensus                                                                     AAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          TCATTCAAAAAGAGCATAAAGCATATAAATTGGAAAAACTAAGTGATATATACTACTCCG
                      ____________________________________________________________
consensus             TCATTCAAAAAGAGCATAAAGCATATAAATTGGAAAAACTAAGTGATATATACTACTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          ATCCATATGGTTAAACTCACAAGTACTTCAGTAAGATATAATTTACTTACTTTTAGTTAA
rJMSF023H13-                       AACTCACAAGTACTTCAGTAAGATATAATTTACTTACTTTTAGTTAA
                      ____________________________________________________________
consensus             ATCCATATGGTTAAACTCACAAGTACTTCAGTAAGATATAATTTACTTACTTTTAGTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          TGAAAAATGGCAGATAAATGTGTAAGGGATTGATCCAAGAAGCCTGCAAACAGGGATGGG
rJMSF023H13-          TGAAAAATGGCAGATAAATGTGTAAGGGATTGATCCAAGAAGCCTGCAAACAGGGATGGG
                      ____________________________________________________________
consensus             TGAAAAATGGCAGATAAATGTGTAAGGGATTGATCCAAGAAGCCTGCAAACAGGGATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          TGAAGAATATAGGAATGTTCATTTCGATTATGCAACTTCTTCCTCTTTCTGGGAGTTCGC
rJMSF023H13-          TGAAGAATATAGGAATGTTCATTTCGATTATGCAACTTCTTCCTCTTTCTGGGAGTTCGC
                      ____________________________________________________________
consensus             TGAAGAATATAGGAATGTTCATTTCGATTATGCAACTTCTTCCTCTTTCTGGGAGTTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          GCTTGAAAGAAGTTCACTACTCTGCAGTTCTTTTACAGGATTCGTGTCAACAGCAGCGGG
rJMSF023H13-          GCTTGAAAGAAGTTCACTACTCTGCAGTTCTTTTACAGGATTCGTGTCAACAGCAGCGGG
                      ____________________________________________________________
consensus             GCTTGAAAGAAGTTCACTACTCTGCAGTTCTTTTACAGGATTCGTGTCAACAGCAGCGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          TGAAGAATTAGGCAGTTTTTGAATGGCAATTTTCAATCGCAATGGCCGACCTTCCACCTC
rJMSF023H13-          TGAAGAATTAGGCAGTTTTTGAATGGCAATTTTCAATCGCAATGGCCGACCTTCCACCTC
                      ____________________________________________________________
consensus             TGAAGAATTAGGCAGTTTTTGAATGGCAATTTTCAATCGCAATGGCCGACCTTCCACCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          CACTCCATCCATGGCACTAAGGGCAGATTCCAGCTCTCCAGCAGAAGCAAAAGAGACAAA
rJMSF023H13-          CACTCCATCCATGGCACTAAGGGCAGATTCCAGCTCTCCAGCAGAAGCAAAAGAGACAAA
                      ____________________________________________________________
consensus             CACTCCATCCATGGCACTAAGGGCAGATTCCAGCTCTCCAGCAGAAGCAAAAGAGACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          CCCGAACCCACGAGACCTCCCAGTCTCCTTGTCATATATGATCTTTGCATTCAAGACTCC
rJMSF023H13-          CCCGAACCCACGAGACCTCCCAGTCTCCTTGTCATATATGATCTTTGCATTCAAGACTCC
                      ____________________________________________________________
consensus             CCCGAACCCACGAGACCTCCCAGTCTCCTTGTCATATATGATCTTTGCATTCAAGACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          CGGCTGGTCTGCAAAAGCCTCTCGTAGGCCTTGAGAAGTGAGGTTCCAGGAGAGGTTCGA
rJMSF023H13-          CGGCTGGTCTGCAAAAGCCTCTCGTAGGCCTTGAGAAGTGAGGTTCCAGGAGAGGTTCGA
                      ____________________________________________________________
consensus             CGGCTGGTCTGCAAAAGCCTCTCGTAGGCCTTGAGAAGTGAGGTTCCAGGAGAGGTTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          TGCATATAATCTGTGAGGACTGTTAAAATTTTCTGGAGAACTGCTCCTCGCCCGTGAGGC
rJMSF023H13-          TGCATATAATCTGTGAGGACTGTTAAAATTTTCTGGAGAACTGCTCCTCGCCCGTGAGGC
                      ____________________________________________________________
consensus             TGCATATAATCTGTGAGGACTGTTAAAATTTTCTGGAGAACTGCTCCTCGCCCGTGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          TATTACTTCCCTTTCTCCTCCTCTTGGCACCTCGGGGAAGTTCACCTTCGCTGTTCTCCC
rJMSF023H13-          TATTACTTCCCTTTCTCCTCCTCTTGGCACCTCGGGGAAGTTCACCTTCGCTGTTCTCCC
JMSF023H13+                                                                     CC
                      ____________________________________________________________
consensus             TATTACTTCCCTTTCTCCTCCTCTTGGCACCTCGGGGAAGTTCACCTTCGCTGTTCTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031J17-          CCCAACTAGAGATCCATCAAACATCCGGATAGCCTCAGTTGCTTCTTCAACACTT     
rJMSF023H13-          CCCAACTAGAGATCCATCAAACATCCGGATAGCCTCAGTTGCTTCTTCAACACTTCCCAT
JMSF023H13+           CCCAACTAGAGATCCATCAAACATCCGGATAGCCTCAGTTGCTTCTTCAACACTTCCCAT
                      ____________________________________________________________
consensus             CCCAACTAGAGATCCATCAAACATCCGGATAGCCTCAGTTGCTTCTTCAACACTTCCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023H13-          TGTAATAAATGCAAATCCTCGACTTCTACCAGTAACTCTATCATAAACAACCTCCACTTT
JMSF023H13+           TGTAATAAATGCAAATCCTCGACTTCTACCAGTAACTCTATCATAAACAACCTCCACTTT
                      ____________________________________________________________
consensus             TGTAATAAATGCAAATCCTCGACTTCTACCAGTAACTCTATCATAAACAACCTCCACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023H13-          ACTAACACGGCCAGCTTCGGAGAAG                                   
JMSF031J17+                               AGAAGATTTCAGACAACTGAGAAGAAGTTAGTGAGAAAGG
JMSF023H13+           ACTAACACGGCCAGCTTCGGAGAAGATTTCAGACAACTGAGAAGAAGTTAGTGAGAAAGG
                      ____________________________________________________________
consensus             ACTAACACGGCCAGCTTCGGAGAAGATTTCAGACAACTGAGAAGAAGTTAGTGAGAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           CAAATTCCCAACAAATAATCTCCCGGCTTCAGCTGATTGAGACTCAACACTTCCATTATC
JMSF023H13+           CAAATTCCCAACAAATAATCTCCCGGCTTCAGCTGATTGAGACTCAACACTTCCATTATC
                      ____________________________________________________________
consensus             CAAATTCCCAACAAATAATCTCCCGGCTTCAGCTGATTGAGACTCAACACTTCCATTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           ACCATCATGATCATCATCTTCTTCTTCTTCTTTTTCAACTTCATCAGTTTCCTCCTCTTC
JMSF023H13+           ACCATCATTATCATCATCTTCTTCTTCTTTTTTTTCAACTTCATCAGTTTCCTCCTCTTC
                      ____________________________________________________________
consensus             ACCATCATTATCATCATCTTCTTCTTCTTTTTTTTCAACTTCATCAGTTTCCTCCTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           CTGTTCTGCAGCTTCTACCACTTGGGTATCTTCTTCGATGGCCTCAATGCTGTCAGCTGA
JMSF023H13+           CTGTTCTGCAGCTTCTACCACTTGGGTATCTTCTTCGATGGCCTCAATGCTGTCAGCTGA
                      ____________________________________________________________
consensus             CTGTTCTGCAGCTTCTACCACTTGGGTATCTTCTTCGATGGCCTCAATGCTGTCAGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           AGCACAGAAGGTGGCAGTGCGAGTGAGGGCATGGAGATTGGAGAAATAGGCAGTGAGTTT
JMSF023H13+           AGCACAGAAGGTGGCAGTGCGAGTGAGGGCATGGAGATTGGAGAAATAGGCAGTGAGTTT
                      ____________________________________________________________
consensus             AGCACAGAAGGTGGCAGTGCGAGTGAGGGCATGGAGATTGGAGAAATAGGCAGTGAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           TGGGTGTTTAAAGGGCTTGGGTTTGGAGGGGAAGTGAAGGGGAGTAGTGAGAGAAAAGTG
JMSF023H13+           TGGGTGTTTAAAGGGCTTGGGTTTGGAGGGGAAGTGAAGGGGAGTAGTGAGAGAAAAGTG
                      ____________________________________________________________
consensus             TGGGTGTTTAAAGGGCTTGGGTTTGGAGGGGAAGTGAAGGGGAGTAGTGAGAGAAAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           GAGCTGGTGGTGGTCCAATGGAAGATTAGTGTAGAGAGGAAGTGAAGATGGTAATGATGA
JMSF023H13+           GAGCTGGTGGTGGTCCAATGGAAGATTAGTGTAGAGAGGAAGTGAAGATGGTAATGATGA
                      ____________________________________________________________
consensus             GAGCTGGTGGTGGTCCAATGGAAGATTAGTGTAGAGAGGAAGTGAAGATGGTAATGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           AGTGGTGGTGAAAGCTACGGCGGTTGTGGCGGTGGTAGCTGCCATTAACGGGGAAGAATT
JMSF023H13+           AGTGGTGGTGAAAGCTACGGCGGTTGTGGCGGTGGTAGCTGCCATTAACGGGGAAGAATT
                      ____________________________________________________________
consensus             AGTGGTGGTGAAAGCTACGGCGGTTGTGGCGGTGGTAGCTGCCATTAACGGGGAAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031J17+           TAACATTGTTGAGC                                              
JMSF023H13+           TAACATTGTTGAGCAAAGAATTTTGCAGAATTGATCGGTGAAAATTTGATTTCCACGACC
                      ____________________________________________________________
consensus             TAACATTGTTGAGCAAAGAATTTTGCAGAATTGATCGGTGAAAATTTGATTTCCACGACC