| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017H11 | Sequence | 539 | 010701 (4) | ref|XP_009785998.1| | 3e-12 | PREDICTED: DNA replication licensing factor MCM4 [Nicotiana sylvestris] | 743 | 018011 | ref|XP_002512966.1| | 295 | DNA replication licensing factor MCM4, putative [Ricinus communis] gb|EEF49469.1 |
| JMFS006G08 | Sequence | 574 | 010701 (4) | ref|XP_009785998.1| | 1e-24 | PREDICTED: DNA replication licensing factor MCM4 [Nicotiana sylvestris] | |||||
| JMFS009C09 | Sequence | 595 | 010701 (4) | ref|XP_009785998.1| | 2e-29 | PREDICTED: DNA replication licensing factor MCM4 [Nicotiana sylvestris] | |||||
| JMSF023D17 | Sequence | 683 | 010701 (4) | ref|XP_009602231.1| | 7e-42 | PREDICTED: DNA replication licensing factor MCM4 [Nicotiana tomentosiformis] | 592 | 005605 (87) | ref|XP_002510603.1| | 231 | Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb|EEF52790.1 |
This contig is upended
. : . : . : . : . : . :
JMSF023D17+ CCATGTCCATCAAAACAATGTCA
____________________________________________________________
consensus CCATGTCCATCAAAACAATGTCA
. : . : . : . : . : . :
JMFS009C09+ CCATTTTGTTGTACAAATCACTGTCATAG
JMFS006G08+ TGTCATAG
JMSF023D17+ AAAATGGCTAGGACCTCAAGTGGATATCTAACCATTTTGTTGTACAAATCACTGTCATAG
____________________________________________________________
consensus AAAATGGCTAGGACCTCAAGTGGATATCTAACCATTTTGTTGTACAAATCACTGTCATAG
. : . : . : . : . : . :
JMFS009C09+ TTAAACACATCATTGGCATCCACATCAAGTGAATCACCTTCCATTTCAATCACGTGGTGA
JMFS006G08+ TTAACNACATCATTTGCATCCACATCAAGTGAATCACCTTCCATTTCAATCACGTGGTGA
JMFF017H11+ TGGTGA
JMSF023D17+ TTAAACACATCATTTGCATCCACATCAAGTGAATCACCTTCCATTTCAATCACGTGGTGA
____________________________________________________________
consensus TTAAACACATCATTTGCATCCACATCAAGTGAATCACCTTCCATTTCAATCACGTGGTGA
. : . : . : . : . : . :
JMFS009C09+ ATGGATATCATGTATTTCCCTTCAACCTGAGAAGAATCTTCACGGAAATGCCTAAGAAAC
JMFS006G08+ ATGGATATCATGTATTTCCCTTCAACCTGAGAAGAATCTTCACGGAAATGCCTAAGAAAC
JMFF017H11+ ATGGATATCATGTATTTCCCTTCAACCTGAGAAGAATCTTCACGGAAATGCCTAAGAAAC
JMSF023D17+ ATGGATATCATGTATTTCCCTTCAACCTGAGAAGAATCTTCACGGAAATGCCTAAGAAAC
____________________________________________________________
consensus ATGGATATCATGTATTTCCCTTCAACCTGAGAAGAATCTTCACGGAAATGCCTAAGAAAC
. : . : . : . : . : . :
JMFS009C09+ CTCAGAATTGCAGCATTCACATCCTGAACAACAATGTTTGTGCCCCAGACATACGTTGGT
JMFS006G08+ CTCAGAATTGCAGCATTCACATCCTGAACAACAATGTTTGTGCCCCAGACATACGTTGGT
JMFF017H11+ CTCAGAATTGCAGCATTCACATCCTGAACAACAATGTTTGTGCCCCAGACATACGTTGGT
JMSF023D17+ CTCAGAATTGCAGCATTCACATCCTGAACAACAATGTTTGTGCCCCAGACATACGTTGGT
____________________________________________________________
consensus CTCAGAATTGCAGCATTCACATCCTGAACAACAATGTTTGTGCCCCAGACATACGTTGGT
. : . : . : . : . : . :
JMFS009C09+ GGGGCGTCATCTCCGCCGTCCGAGGAGGGCGAAGGCGCAGAGGAATCACCCCCGCCACCG
JMFS006G08+ GGGGCGTCATCTCCGCCGTCCGAGGAGGGCGAAGGCGCAGAGGAATCACCCCCGCCACCG
JMFF017H11+ GGGGCGTCATCTCCGCCGTCCGAGGAGGGCGAAGGCGCAGAGGAATCACCCCCGCCACCG
JMSF023D17+ GGGGCGTCATCTCCGCCGTCCGAGGAGGGCGAAGGCGCAGAGGAATCACCCCCGCCACCG
____________________________________________________________
consensus GGGGCGTCATCTCCGCCGTCCGAGGAGGGCGAAGGCGCAGAGGAATCACCCCCGCCACCG
. : . : . : . : . : . :
JMFS009C09+ CCCATCGAGGACTGCGGTGCATCATCGGTGGAGGAAGGCGTGGCCGCAGCAGCGGCGGAA
JMFS006G08+ CCCATCGAGGACTGCGGTGCATCATCGGTGGAGGAAGGCGTGGCCGCAGCAGCGGCGGAA
JMFF017H11+ CCCATCGAGGACTGCGGTGCATCATCGGTGGAGGAAGGCGTGGCCGCAGCAGCGGCGGAA
JMSF023D17+ CCCATCGAGGACTGCGGTGCATCATCGGTGGAGGAAGGCGTGGCCGCAGCAGCGGCGGAA
____________________________________________________________
consensus CCCATCGAGGACTGCGGTGCATCATCGGTGGAGGAAGGCGTGGCCGCAGCAGCGGCGGAA
. : . : . : . : . : . :
JMFS009C09+ GTAAACCTACTTCCGCCGCGTCTTCGAGGATTCCTACTGGACGGAGTAGGCGTTGCGTCC
JMFS006G08+ GTAAACCTACTTCCGCCGCGTCTTCGAGGATTCCTACTGGACGGAGTAGGCGTTGCGTCC
JMFF017H11+ GTAAACCTACTTCCGCCGCGTCTTCGAGGATTCCTACTGGACGGAGTAGGCGTTGCGTCC
JMSF023D17+ GTAAACCTACTTCCGCCGCGTCTTCGAGGATTCCTACTGGACGGAGTAGGCGTTGCGTCC
____________________________________________________________
consensus GTAAACCTACTTCCGCCGCGTCTTCGAGGATTCCTACTGGACGGAGTAGGCGTTGCGTCC
. : . : . : . : . : . :
JMFS009C09+ GGAGTGGTAAAGCGAGGGTTAGCAGGGGCCGGCGACGTTGCAGCGGAGGAAGAGCGACGC
JMFS006G08+ GGAGTGGTAAAGCGAGGGTTAGCAGGGGCCGGCGACGTTGCAGCGGAGGAAGAGCGACGC
JMFF017H11+ GGAGTGGTAAAGCGAGGGTTAGCAGGGGCCGGCGACGTTGCAGCGGAGGAAGAGCGACGC
JMSF023D17+ GGAGTGGTAAAGCGAGGGTTAGCAGGGGCCGGCGACGTTGCAGCGGAGGAAGAGCGACGC
____________________________________________________________
consensus GGAGTGGTAAAGCGAGGGTTAGCAGGGGCCGGCGACGTTGCAGCGGAGGAAGAGCGACGC
. : . : . : . : . : . :
JMFS009C09+ CCGCGTTTCCGCCGACCGGAGTCGGCGGGAGATGAGAACGTGTTTGCGATTGGGCTCGAA
JMFS006G08+ CCGCGTTTCCGCCGACCGGAGTCGGCGGGAGATGAGAACGTGTTTGCGATTGGGCTCGAA
JMFF017H11+ CCGCGTTTCCGCCGACCGGAGTCGGCGGGAGATGAGAACGTGTTTGCGATTGGGCTCGAA
JMSF023D17+ CCGCGTTTCCGCCGACCGGAGTCGGCGGGAGATGAGAACGTGTTTGCGATTGGGCTCGAA
____________________________________________________________
consensus CCGCGTTTCCGCCGACCGGAGTCGGCGGGAGATGAGAACGTGTTTGCGATTGGGCTCGAA
. : . : . : . : . : . :
JMFS009C09+ AGCGAGTCGTAAGGCGAAGATGGATCGCCGTGAGTGTTGGCCGGAGACGAATCGGAAGCC
JMFS006G08+ AGCGAGTCGTAAGGCGAAGATGGATCGCCGTGAGTGTTGGCCGGAGACGAATCGGAAGCC
JMFF017H11+ AGCGAGTCGTAAGGCGAAGATGGATCGCCGTGAGTGTTGGCCGGAGACGAATCGGAAGCC
JMSF023D17+ AGCGAGTCGTAAGGCGAAGATGGATCGCCGTGAGTGTTGGCCGGAGACGAATCGGAAGCC
____________________________________________________________
consensus AGCGAGTCGTAAGGCGAAGATGGATCGCCGTGAGTGTTGGCCGGAGACGAATCGGAAGCC
. : . : . : . : . : . :
JMFS009C09+ ATGATCGGACGTAACTCTTCCGTCGG
JMFS006G08+ ATGATCGGACGTAACTCTTCCGTCGG
JMFF017H11+ ATGATCGGACGTAACTCTTCCGTCGGTCAACCAGAGAGAGTGAGATTATG
JMSF023D17+ ATGATCGGACGTAACTCTTCCGTCGGTCAACCAGAGAGAGTGAGATTATGCCTAGGCCTC
____________________________________________________________
consensus ATGATCGGACGTAACTCTTCCGTCGGTCAACCAGAGAGAGTGAGATTATGCCTAGGCCTC