Contig 010671:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020E14Sequence683010671 (2)gb|AGW97256.1|5e-157ATP synthase CF1 alpha subunit (chloroplast) [Ipomoea hederifolia]152007218 (2)
JMSF044F08Sequence800010671 (2)gb|AGW97256.1|0.0ATP synthase CF1 alpha subunit (chloroplast) [Ipomoea hederifolia]533007218 (2)gb|AGW97681.1|2e-04ATP synthase CF1 alpha subunit (chloroplast) [Ipomoea pedicellaris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044F08+ CGGATAAGAATATTTGTCCA
                      ____________________________________________________________
consensus CGGATAAGAATATTTGTCCA
 
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JMSF044F08+ TCAGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCTCCCGATTGCGTTTCA
                      ____________________________________________________________
consensus TCAGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCTCCCGATTGCGTTTCA
 
. : . : . : . : . : . :
JMSF044F08+ ACTATAGGTAAGGCGGTCATACTCCCCTCACCTAACTTAGAACTTAATTTAGCAGCTCTT
JMSF020E14+ TAGAACTTAATTTAGCAGCTCTT
                      ____________________________________________________________
consensus ACTATAGGTAAGGCGGTCATACTCCCCTCACCTAACTTAGAACTTAATTTAGCAGCTCTT
 
. : . : . : . : . : . :
JMSF044F08+ TCCAAAAGGCGTGAGTGCAAATAAAAAACATCTCCTGGATAAGCTTCGCGACCGGGCGGT
JMSF020E14+ TCCAAAAGGCGTGAGTGCAAATAAAAAACATCTCCTGGATAAGCTTCGCGACCGGGCGGT
                      ____________________________________________________________
consensus TCCAAAAGGCGTGAGTGCAAATAAAAAACATCTCCTGGATAAGCTTCGCGACCGGGCGGT
 
. : . : . : . : . : . :
JMSF044F08+ CTGCGTAATAGAAGAGACATTTGGCGATAAGCTTGGGCTTGTTTGGAGAGATCATCATAA
JMSF020E14+ CTGCGTAATAGAAGAGACATTTGGCGATAAGCTTGGGCTTGTTTGGAGAGATCATCATAA
                      ____________________________________________________________
consensus CTGCGTAATAGAAGAGACATTTGGCGATAAGCTTGGGCTTGTTTGGAGAGATCATCATAA
 
. : . : . : . : . : . :
JMSF044F08+ ATGATTAAAGTGTGTCTTTCACGATACATAAAATATTCAGCCAGAGCTGCTCCTGTATAA
JMSF020E14+ ATGATTAAAGTGTGTCTTTCACGATACATAAAATATTCAGCCAGAGCTGCTCCTGTATAA
                      ____________________________________________________________
consensus ATGATTAAAGTGTGTCTTTCACGATACATAAAATATTCAGCCAGAGCTGCTCCTGTATAA
 
. : . : . : . : . : . :
JMSF044F08+ GGAGCGAGGTATTGTAATGTAGCAGGGGAATCCGCCGTTTCGGCTACCACAATAGTGTAT
JMSF020E14+ GGAGCGAGGTATTGTAATGTAGCAGGGGAATCCGCCGTTTCGGCTACCACAATAGTGTAT
                      ____________________________________________________________
consensus GGAGCGAGGTATTGTAATGTAGCAGGGGAATCCGCCGTTTCGGCTACCACAATAGTGTAT
 
. : . : . : . : . : . :
JMSF044F08+ TCAATCGCCCCCCTTTCCTGTAAGGTATTAACTACCTGAGCCACAGAAGATGCTTTTTGC
JMSF020E14+ TCAATCGCCCCCCTTTCCTGTAAGGTATTAACTACCTGAGCCACAGAAGATGCTTTTTGC
                      ____________________________________________________________
consensus TCAATCGCCCCCCTTTCCTGTAAGGTATTAACTACCTGAGCCACAGAAGATGCTTTTTGC
 
. : . : . : . : . : . :
JMSF044F08+ CCAATAGCTACATAAACACATATTACATTTTGACCTTGTTGATTGAGAATCGTATCCGTG
JMSF020E14+ CCAATAGCTACATAAACACATATTACATTTTGACCTTGTTGATTGAGAATCGTATCCGTG
                      ____________________________________________________________
consensus CCAATAGCTACATAAACACATATTACATTTTGACCTTGTTGATTGAGAATCGTATCCGTG
 
. : . : . : . : . : . :
JMSF044F08+ GCTACTGCTGTTTTACCGGTTTGTCTGTCGCCAATAATTAATTCGCGCTGACCACGTCCT
JMSF020E14+ GCTACTGCTGTTTTACCGGTTTGTCTGTCGCCAATAATTAATTCGCGCTGACCACGTCCT
                      ____________________________________________________________
consensus GCTACTGCTGTTTTACCGGTTTGTCTGTCGCCAATAATTAATTCGCGCTGACCACGTCCT
 
. : . : . : . : . : . :
JMSF044F08+ ATAGGGATCATCGAATCGATAGCAATAAGCCCGGTTTGAAGAGGCTCATATACGGAACGA
JMSF020E14+ ATAGGGATCATCGAATCGATAGCAATAAGCCCGGTTTGAAGAGGCTCATATACGGAACGA
                      ____________________________________________________________
consensus ATAGGGATCATCGAATCGATAGCAATAAGCCCGGTTTGAAGAGGCTCATATACGGAACGA
 
. : . : . : . : . : . :
JMSF044F08+ CGCGAAATAATCCCCGGAGCAGGGGATTCAATTAATCGAAATCCAGAAGCTGAAATTTCG
JMSF020E14+ CGCGAAATAATCCCCGGAGCAGGGGATTCAATTAATCGAAATCCAGAAGCTGAAATTTCG
                      ____________________________________________________________
consensus CGCGAAATAATCCCCGGAGCAGGGGATTCAATTAATCGAAATCCAGAAGCTGAAATTTCG
 
. : . : . : . : . : . :
JMSF044F08+ CCCCTACCATCAATAGGGTTAGCCAGGGCATTTATAACACGACCCAAATAGGCTTCACCC
JMSF020E14+ CCCCTACCATCAATAGGGTTAGCCAGGGCATTTATAACACGACCCAAATAGGCTTCACCC
                      ____________________________________________________________
consensus CCCCTACCATCAATAGGGTTAGCCAGGGCATTTATAACACGACCCAAATAGGCTTCACCC
 
. : . : . : . : . : . :
JMSF044F08+ ACCGGTATCTGAGCAATTCTTGCCGTTGCTTTTACAGAACTTCCTTCTTGTATCATCAAC
JMSF020E14+ ACCGGTATCTGAGCAATTCTTGCCGTTGCTTTTACAGAACTTCCTTCTTGTATCATCAAC
                      ____________________________________________________________
consensus ACCGGTATCTGAGCAATTCTTGCCGTTGCTTTTACAGAACTTCCTTCTTGTATCATCAAC