Contig 010641:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030E09Sequence620010641 (3)
JMSF016F07Sequence289010641 (3)
JMSF018H03Sequence221010641 (3)743006141 (4)ref|XP_004137828.1|8e-66PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus] ref|X

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS030E09+ GCCAATCCTATGTAATTCC
                      ____________________________________________________________
consensus GCCAATCCTATGTAATTCC
 
. : . : . : . : . : . :
JMFS030E09+ ACACTACAAGTGTCATCATTACAAATTCTAGAATCCGGAAAGAGTTAATAATATTTTCAT
                      ____________________________________________________________
consensus ACACTACAAGTGTCATCATTACAAATTCTAGAATCCGGAAAGAGTTAATAATATTTTCAT
 
. : . : . : . : . : . :
JMFS030E09+ GTCTTTATCCTAACACGCTTTCAATTTATTTCATTCTACAATTTTTTTTAGTCTGTGTGG
                      ____________________________________________________________
consensus GTCTTTATCCTAACACGCTTTCAATTTATTTCATTCTACAATTTTTTTTAGTCTGTGTGG
 
. : . : . : . : . : . :
JMFS030E09+ AGAATTCGCTGTTAAGGTCATGAACTTGAACAAATTTTTGGCTGTTCAGTGTTCAACCAG
                      ____________________________________________________________
consensus AGAATTCGCTGTTAAGGTCATGAACTTGAACAAATTTTTGGCTGTTCAGTGTTCAACCAG
 
. : . : . : . : . : . :
JMFS030E09+ TTCGATCATAAGAATCATTAGAAACTATCATTTTTCAAATACTAATTTGACTAAGAATCG
                      ____________________________________________________________
consensus TTCGATCATAAGAATCATTAGAAACTATCATTTTTCAAATACTAATTTGACTAAGAATCG
 
. : . : . : . : . : . :
JMFS030E09+ CATAATAAAACGCATACGACGACAACAGCTAAACGTAATCCAGAAACAACTAAACCAGCT
                      ____________________________________________________________
consensus CATAATAAAACGCATACGACGACAACAGCTAAACGTAATCCAGAAACAACTAAACCAGCT
 
. : . : . : . : . : . :
JMFS030E09+ TGCAAAAATTCCAACTCTAGCCGAAACACATCAGATATGGGATGTTTTCCTCAACAGTTT
                      ____________________________________________________________
consensus TGCAAAAATTCCAACTCTAGCCGAAACACATCAGATATGGGATGTTTTCCTCAACAGTTT
 
. : . : . : . : . : . :
JMFS030E09+ GCTGTTCTGAGATATTTCTACGCGAAAATCAATGACAATAAGAGGAGAGAGAAGGAGAAA
                      ____________________________________________________________
consensus GCTGTTCTGAGATATTTCTACGCGAAAATCAATGACAATAAGAGGAGAGAGAAGGAGAAA
 
. : . : . : . : . : . :
JMFS030E09+ GCAAGATAAATCTTACAGATATGGCTTTAGGGTAAGGAGGATTGGCATCCTGGCCGGCGA
                      ____________________________________________________________
consensus GCAAGATAAATCTTACAGATATGGCTTTAGGGTAAGGAGGATTGGCATCCTGGCCGGCGA
 
. : . : . : . : . : . :
JMFS030E09+ TCAAAGCTTCCGACGCCGGAAAAGGAATCGCGATCAGAACCAAACAAATAGCTGCGAAGC
JMSF018H03- CAAACAAAGAGCTGCGAAGC
                      ____________________________________________________________
consensus TCAAAGCTTCCGACGCCGGAAAAGGAATCGCGATCAGAACCAAACAAATAGCTGCGAAGC
 
. : . : . : . : . : . :
JMFS030E09+ TAACCCATCGAATCCTCGTCGGAGCCATGCGGCCGGAGAA
JMSF018H03- TAACCGATCGAATCCTCATCGGAGCCATGCGGCCGGAGAATTCTAGAACGCAGGGGACGA
                      ____________________________________________________________
consensus TAACCGATCGAATCCTCGTCGGAGCCATGCGGCCGGAGAATTCTAGAACGCAGGGGACGA
 
. : . : . : . : . : . :
JMSF018H03- GAGCCGTCTAGATCTAAGTGGTTGACGACCTCCATCGCAAGCTCCCTGTCGCATCGCA
JMSF016F07+ ATCTAAGTGGTTGACGACCTCCATCGCAAGCTCCCTGTCGCATCGCAGA
                      ____________________________________________________________
consensus GAGCCGTCTAGATCTAAGTGGTTGACGACCTCCATCGCAAGCTCCCTGTCGCATCGCAGA
 
. : . : . : . : . : . :
JMSF016F07+ AGGGAGAGGATTTTGAGAGAGTGTGGGATTAGAGAGAAGACATGCTCTCCGTGTCGCATC
                      ____________________________________________________________
consensus AGGGAGAGGATTTTGAGAGAGTGTGGGATTAGAGAGAAGACATGCTCTCCGTGTCGCATC
 
. : . : . : . : . : . :
JMSF016F07+ ACAAACCTCCATCGCAAGCTCCCTCCGTCGCGGTGGTGGCAGTGAACGGTGGGTGGCAAC
                      ____________________________________________________________
consensus ACAAACCTCCATCGCAAGCTCCCTCCGTCGCGGTGGTGGCAGTGAACGGTGGGTGGCAAC
 
. : . : . : . : . : . :
JMSF016F07+ AAGGGCAGTGAGACGATTGGTGCGACGGTGGATCGAAGCAACGGTAGATGAAGACTATTT
                      ____________________________________________________________
consensus AAGGGCAGTGAGACGATTGGTGCGACGGTGGATCGAAGCAACGGTAGATGAAGACTATTT
 
. : . : . : . : . : . :
JMSF016F07+ TAGATCAGATGAGATGCGATTTCTGATCTAGTTAGTAGATCTAGTCCAGGGTTAATATTC
                      ____________________________________________________________
consensus TAGATCAGATGAGATGCGATTTCTGATCTAGTTAGTAGATCTAGTCCAGGGTTAATATTC