Contig 010635:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039L07Sequence485010635 (5)gb|AGL34964.1|1e-14ethylene-responsive transcription factor 5 [Hevea brasiliensis]727018051gb|ADP37421.1|2e-07ethylene-responsive-element-binding factor 6 [Petunia x hybrida]
JMSF015C14Sequence356010635 (5)dbj|BAD99476.1|2e-24class II ethylene responsive element binding factor-like protein [Nicotiana ben687010635 (5)gb|ADP37421.1|6e-06ethylene-responsive-element-binding factor 6 [Petunia x hybrida]
JMSF026J23Sequence667010635 (5)ref|XP_009622637.1|3e-32PREDICTED: ethylene-responsive transcription factor 4 [Nicotiana tomentosiformi544010635 (5)

Alignment

This contig is upended


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rJMSF026J23- ATTTAAAGTATTCAC
                      ____________________________________________________________
consensus ATTTAAAGTATTCAC
 
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rJMSF026J23- ATGGATCGGCGGTCATTCATGGATCGCCGGAATCACTCGCCGTTATCCTATATCCTACCA
rJMSF015C14- GTCATTCATGGATCGCCGGAATCACTCGCCGTTATCCTATATCCTACCA
                      ____________________________________________________________
consensus ATGGATCGGCGGTCATTCATGGATCGCCGGAATCACTCGCCGTTATCCTATATCCTACCA
 
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rJMSF026J23- CCTCTTTTTTGTTTTTTCCTTTTTTTGGTTTAATGAAAAAGGAAATTACACCTAAAATTA
rJMSF015C14- CCTCTTTTTTGTTTTTTCCTTTTTTTGGTTTAATGAAAAAGGAAATTACACCTAAAATTA
                      ____________________________________________________________
consensus CCTCTTTTTTGTTTTTTCCTTTTTTTGGTTTAATGAAAAAGGAAATTACACCTAAAATTA
 
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rJMSF026J23- ACCAAAAAAAAAACAAAAAACAAAAAACAAAAAAGATTTTTGANAGATTGGAGTTGANAA
rJMSF015C14- ACCAAAAAAAAAACAAAAAACAAAAAACAAAAAAGATTTTTGANAGATTGGAGTTGANAA
                      ____________________________________________________________
consensus ACCAAAAAAAAAACAAAAAACAAAAAACAAAAAAGATTTTTGANAGATTGGAGTTGANAA
 
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rJMSF026J23- TATCAAANAGCGCCGGTTCCNANACTCTCAGGCGGNGGGTGGTTGANATCGAAATTGTTA
rJMSF015C14- TATCAAANAGCGCCGGTTCCNANACTCTCAGGCGGNGGGTGGTTGANATCGAAATTGTTA
                      ____________________________________________________________
consensus TATCAAANAGCGCCGGTTCCNANACTCTCAGGCGGNGGGTGGTTGANATCGAAATTGTTA
 
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rJMSF026J23- ATGGGCCCAACCTTTCGCGGTTCGCGATAGCCGACGTTCAAGTCAATGACCGATGAANAG
rJMSF015C14- ATGGGCCCAACCTTTCGCGGTTCGCGATAGCCGACGTTCAAGTCAATGACCGATGAANAG
                      ____________________________________________________________
consensus ATGGGCCCAACCTTTCGCGGTTCGCGATAGCCGACGTTCAAGTCAATGACCGATGAANAG
 
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rJMSF026J23- TCGGACTCGCTGTGGTCCCCGAAGTTGGCGTTGGTGGCGAAAAAATTGAGGGTCTCGGCT
rJMSF015C14- TCGGACTCGCTGTGGTCCCCGAAGTTGGCGTTGGTGGCGAAAAAATTGAGGGTCTCGGCT
                      ____________________________________________________________
consensus TCGGACTCGCTGTGGTCCCCGAAGTTGGCGTTGGTGGCGAAAAAATTGAGGGTCTCGGCT
 
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rJMSF026J23- TGGCGGTTGANAGGAGGGTTCACCGCCACGGCACGGGCAAGCGCGTTGAGATAAACTAAC
rJMSF015C14- TGGCGGTTGANAGGAGGGTTCACCGCCACGGCACGGGCAAGCGCGTTGAGATAAACTAAC
JMSF026J23+ AACTAAC
                      ____________________________________________________________
consensus TGGCGGTTGANAGGAGGGTTCACCGCCACGGCACGGGCAAGCGCGTTGAGATAAACTAAC
 
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rJMSF026J23- TGGCTGACGGGATANACGCCAGCCGGGTACGCGCCGGGGACCATGTGAGGAACGACNCGG
rJMSF015C14- TGGCTGACGGGATANACNCCAGCCGGGTACGCGCCGGGGACCATGTGAGGAACGACNCGG
JMSF026J23+ TGGCTGACGGGATAGACGCCAGCCGGGTACGCGCCGGGGACCATGTGAGGAACGACGCGG
                      ____________________________________________________________
consensus TGGCTGACGGGATAGACGCCAGCCGGGTACGCGCCGGGGACCATGTGAGGAACGACGCGG
 
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rJMSF026J23- TGGGGGTTCGGTATCGGAAACATCACCGGTGCACGGCCGCCGAGGCTTA
rJMSF015C14- TGGGGGTT-GGTATCGGAAACATCACCGGTGCACGGCCGCCGAGGCTTAAATCCAGAGGC
JMSF026J23+ TGGGGGTTCGGTATCGGAAACATCACCGGTGCACGGCCGCCGAGGCTTAGATCCAGAGGC
                      ____________________________________________________________
consensus TGGGGGTTCGGTATCGGAAACATCACCGGTGCACGGCCGCCGAGGCTTAGATCCAGAGGC
 
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rJMSF015C14- GACGAGTCCGCCATCACGGCGGGCGAGATACGACCGCCCCCGCCGCCGTCGCGGCTCGAC
JMSF026J23+ GACGAGTCCGCCATCACGGCGGGCGAGATACGACCGCCCCCGCCGCCGTCGCGGCTCGAC
                      ____________________________________________________________
consensus GACGAGTCCGCCATCACGGCGGGCGAGATACGACCGCCCCCGCCGCCGTCGCGGCTCGAC
 
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rJMSF015C14- GACTCAACAGTGCTGCTCGGGCTAGGACTCTGTCCGTTTCCGCCGGCGTTCTTCTCACAA
JMSF026J23+ GACTCAACAGTGCTGCTCGGGCTAGGACTCTGTCCGTTTCCGCCGGCGTTCTTCTCACAA
                      ____________________________________________________________
consensus GACTCAACAGTGCTGCTCGGGCTAGGACTCTGTCCGTTTCCGCCGGCGTTCTTCTCACAA
 
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rJMSF015C14- ACGCTATTCTTCACG
JMSF026J23+ ACGCTATTCTTCACGACGCGTAATTGCGTGGCAAAATTGATCGGAAGGAGATCCTCCGGC
                      ____________________________________________________________
consensus ACGCTATTCTTCACGACGCGTAATTGCGTGGCAAAATTGATCGGAAGGAGATCCTCCGGC
 
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JMFF039L07+ CCCTGGCCGCCTTGTCGTAAGCC
JMSF026J23+ ACCGGAAAATTAGTCTTGGCCTTGGAACCCCGGAACTCCCTGGCCGCCTTATCGTAAGCC
                      ____________________________________________________________
consensus ACCGGAAAATTAGTCTTGGCCTTGGAACCCCGGAACTCCCTGGCCGCCTTGTCGTAAGCC
 
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JMFF039L07+ CTAGCGGCCTCCTCCGCCGTCTCGAACGTCCCGAGCCAAACCCGCGTCCTCCGAGCGGGA
JMSF026J23+ CTGGCCGCCTCCTCCGCCGTATCAAACGTCCCGAGCCAAACGCGGCTCTTCTTGCCGGGA
JMSF015C14+ GCCGCCTCCTCCGCCGTATCAAACGTCCCGAGCCAAACGCGGCTCTTCTTGCCGGGA
                      ____________________________________________________________
consensus CTGGCCGCCTCCTCCGCCGTATCAAACGTCCCGAGCCAAACGCGGCTCTTCTTGCCGGGA
 
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JMFF039L07+ TCTCTGATCTCCGCCGCGTACTTCCCCCACGGCCTCTTCCT
JMSF026J23+ TCCCTGATCTCCGCCGCGTACCTCCCCCACGGCCTCTTCCTCACACCCCTAAAATGCACT
JMSF015C14+ TCCCTGATCTCCGCCGCGTACCTCCCCCACGGCCTCTTCCTCACACCCCTAAAATGCACT
                      ____________________________________________________________
consensus TCCCTGATCTCCGCCGCGTACCTCCCCCACGGCCTCTTCCTCACACCCCTAAAATGCACT
 
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JMSF026J23+ TGCTCCTTCCGAATATCGTGCAACTTCGCCGCCGCAACCGCCATCGCCGTCCCCTTCTCC
JMSF015C14+ TGCTCCTTCCGAATATCGTGCAACTTCGCCGCCGCAACCGCCATCGCCGTCCCCTTCTCC
                      ____________________________________________________________
consensus TGCTCCTTCCGAATATCGTGCAACTTCGCCGCCGCAACCGCCATCGCCGTCCCCTTCTCC
 
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JMSF026J23+ TTGGGAGCCATTCCAATTCCAACAAATATATATAATTATTATTATGCGCTCCGGGCGTGT
JMSF015C14+ TTGGGAGCCATTCCAATTCCAACAAATATATATAATTATTATTATGCGCTCCGGGCGTGT
                      ____________________________________________________________
consensus TTGGGAGCCATTCCAATTCCAACAAATATATATAATTATTATTATGCGCTCCGGGCGTGT
 
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JMSF026J23+ AAATAAATTATGGGTGTGGGCTGCAGTGATAGAAACATGGAAATGAAGCGTACGGCTG
JMSF015C14+ AAATAAATTATGGGTGTGGGCTGCAGTGATAGAAACATGGAAATGAAGCGTACGGCTGTC
                      ____________________________________________________________
consensus AAATAAATTATGGGTGTGGGCTGCAGTGATAGAAACATGGAAATGAAGCGTACGGCTGTC