Contig 010632:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045I02Sequence647020642gb|KHG28977.1|2e-92U4/U6 small nuclear ribonucleoprotein Prp31 [Gossypium arboreum]609010632 (4)ref|XP_003553898.1|4e-49PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] gb|KH
JMFN016C06Sequence626010632 (4)ref|XP_006355421.1|1e-77PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Solanum tuberosum]
JMSF014J02Sequence477010632 (4)ref|XP_002320218.2|4e-73hypothetical protein POPTR_0014s09840g [Populus trichocarpa] gb|EEE98533.2| hypo758010632 (4)ref|XP_010251303.1|3e-73PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Nelumbo nucifera] ref|X

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF045I02- CTTTTTTTTTTTTTTTATACAAAATAAAACTG
rJMSF014J02- TATACAAAATAAAACTG
                      ____________________________________________________________
consensus CTTTTTTTTTTTTTTTATACAAAATAAAACTG
 
. : . : . : . : . : . :
rJMFF045I02- AGATAAATCATTATTTTAGAGAATTGATGACAAGCATGGGTTACAAAAAACCAGTATCAA
rJMSF014J02- AGATAAATCATTATTTTAGAGAATTGATGACAAGCATGGGTTACAAAAAACCAGTATCAA
                      ____________________________________________________________
consensus AGATAAATCATTATTTTAGAGAATTGATGACAAGCATGGGTTACAAAAAACCAGTATCAA
 
. : . : . : . : . : . :
rJMFF045I02- CCCAAAAACAGAGGCTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
JMFN016C06+ CTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
rJMSF014J02- CCCAAAAACAGAGGCTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
                      ____________________________________________________________
consensus CCCAAAAACAGAGGCTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
 
. : . : . : . : . : . :
rJMFF045I02- CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
JMFN016C06+ CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
rJMSF014J02- CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
                      ____________________________________________________________
consensus CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
 
. : . : . : . : . : . :
rJMFF045I02- CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
JMFN016C06+ CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
rJMSF014J02- CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
                      ____________________________________________________________
consensus CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
 
. : . : . : . : . : . :
rJMFF045I02- ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
JMFN016C06+ ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
rJMSF014J02- ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
                      ____________________________________________________________
consensus ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
 
. : . : . : . : . : . :
rJMFF045I02- CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
JMFN016C06+ CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
rJMSF014J02- CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
                      ____________________________________________________________
consensus CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
 
. : . : . : . : . : . :
rJMFF045I02- GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
JMFN016C06+ GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
rJMSF014J02- GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
                      ____________________________________________________________
consensus GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
 
. : . : . : . : . : . :
rJMFF045I02- CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
JMFN016C06+ CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
rJMSF014J02- CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
JMSF014J02+ AACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
                      ____________________________________________________________
consensus CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
 
. : . : . : . : . : . :
rJMFF045I02- TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
JMFN016C06+ TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
rJMSF014J02- TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
JMSF014J02+ TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
                      ____________________________________________________________
consensus TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
 
. : . : . : . : . : . :
rJMFF045I02- TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCT
JMFN016C06+ TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
rJMSF014J02- TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
JMSF014J02+ TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
                      ____________________________________________________________
consensus TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
 
. : . : . : . : . : . :
JMFN016C06+ CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
rJMSF014J02- CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
JMSF014J02+ CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
                      ____________________________________________________________
consensus CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
 
. : . : . : . : . : . :
JMFN016C06+ TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGT
rJMSF014J02- TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGTAGCTTTCGCAGCTAACAGTC
JMSF014J02+ TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGTAGCTTTCGCAGCTAACAGTC
                      ____________________________________________________________
consensus TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGTAGCTTTCGCAGCTAACAGTC
 
. : . : . : . : . : . :
rJMSF014J02- GACAGGCACGCATCCT
JMSF014J02+ GACAGGCACGCATCCTTAGAGGAGGGGGTGTGCTCTGAAATATTTCTGTCTGCTCAATAA
                      ____________________________________________________________
consensus GACAGGCACGCATCCTTAGAGGAGGGGGTGTGCTCTGAAATATTTCTGTCTGCTCAATAA
 
. : . : . : . : . : . :
JMSF014J02+ ATCCAATGCGAAATTGGGATGTCGCTGTGGAGAACCCAGCAAGGGTCTTCTTTTTAGCAC
                      ____________________________________________________________
consensus ATCCAATGCGAAATTGGGATGTCGCTGTGGAGAACCCAGCAAGGGTCTTCTTTTTAGCAC
 
. : . : . : . : . : . :
JMSF014J02+ CAAGAACCTGCACATTACAAGCAGGCATCTTCGCCAATGAGGAAAGACCACCAGCAGTCC
                      ____________________________________________________________
consensus CAAGAACCTGCACATTACAAGCAGGCATCTTCGCCAATGAGGAAAGACCACCAGCAGTCC