Contig 010612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS089F01Sequence649010612 (6)ref|XP_011079403.1|2e-117PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Sesamum indicum]
JMFS089F08Sequence591010612 (6)ref|XP_004242592.1|4e-106PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Solanum lycopersicum
JMFS112G10Sequence621010612 (6)ref|XP_011079403.1|2e-111PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Sesamum indicum]
JMSF011A12Sequence216010612 (6)727006259 (4)ref|XP_009787244.1|1e-119PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Nicotiana sylvestris
JMSF014P23Sequence234010612 (6)gb|KDP38683.1|6e-08hypothetical protein JCGZ_04036 [Jatropha curcas]720006259 (4)ref|XP_009787244.1|3e-98PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Nicotiana sylvestris
JMSF022L12Sequence697010612 (6)ref|XP_006343649.1|3e-95PREDICTED: probable cyclic nucleotide-gated ion channel 5-like isoform X1 [Sola781006259 (4)ref|XP_009616554.1|4e-134PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Nicotiana tomentosif

Alignment

This contig is upended


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JMFS089F01+                             GATAAAAAGCAATGCCTGTTTTGTAGCTAGTACATCTGACCC
JMFS112G10+                                                          GTACATCTGACCC
                      ____________________________________________________________
consensus                               GATAAAAAGCAATGCCTGTTTTGTAGCTAGTACATCTGACCC
 
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JMFS089F01+           TTTTGATCTCTGTAGAAATCTCCAGACTACAATCTGAGGCAAAGGTAGCACCGCAAGAAA
JMFS112G10+           TTNTGATCTCTGTAGAAATCTCCAGACTACAATCTGAGGCAAAGGTAGCACCGCAAGAAA
JMFS089F08+                                CCAGACTACAATCTGAGGCAAAGGTAGCACCGCAAGANA
                      ____________________________________________________________
consensus             TTTTGATCTCTGTAGAAATCTCCAGACTACAATCTGAGGCAAAGGTAGCACCGCAAGAAA
 
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JMFS089F01+           ATCAATGATAAAATAGGTGCGCAGGTATCGTTTAGCAATTTGTCCAGGATCTATTACAAG
JMFS112G10+           ATCAATGATAAAATAGGTGCGCAGGTATCGTTTAGCAATTTGTCCAGGATCTATTACAAG
JMFS089F08+           ATCAATGATAAAATAGGTGCGCAGGTATCGTTTAGCAATTTGTCCAGGATCTATTACAAG
                      ____________________________________________________________
consensus             ATCAATGATAAAATAGGTGCGCAGGTATCGTTTAGCAATTTGTCCAGGATCTATTACAAG
 
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JMFS089F01+           CTCACCCCGACCAAAAACCCGAGATGATGGAGCAATATAAGCTGTGCGAAATTGAAGGGC
JMFS112G10+           CTCACCCCGACCAAAAACCCGAGATGATGGAGCAATATAAGCTGTGCGAAATTGAAGGGC
JMFS089F08+           CTCACCCCGACCAAAAACCCGAGATGATGGAGCAATATAAGCTGTGCGAAATTGAAGGGC
JMSF022L12+                            CCCGAGATGATGGAGCAATATAAGCTGTGCGAAATTGAAGGGC
                      ____________________________________________________________
consensus             CTCACCCCGACCAAAAACCCGAGATGATGGAGCAATATAAGCTGTGCGAAATTGAAGGGC
 
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JMFS089F01+           CATATGAAAGAGATAGAAAGCATCGATAACCGTTCGCAACGTTGTCGCTATTATAGCCAA
JMFS112G10+           CATATGAAAGAGATAGAAAGCATCGATAACCGTTCGCAACGTTGTCGCTATTATAGCCAA
JMFS089F08+           CATATGAAAGAGATAGAAAGCATCGATAACCGTTCGCAACGTTGTCGCTATTATAGCCAA
JMSF022L12+           CATATGAAAGAGATAGAAAGCATCGATAACCGTTCGCAACGTTGTCGCTATTATAGCCAA
                      ____________________________________________________________
consensus             CATATGAAAGAGATAGAAAGCATCGATAACCGTTCGCAACGTTGTCGCTATTATAGCCAA
 
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JMFS089F01+           CTTTCGATCAATCCCAAGACAATTTGACTGATCATTAAAAACTGGAAGGTAGAAAAACAG
JMFS112G10+           CTTTCGATCAATCCCAAGACAATTTGACTGATCATTAAAAACTGGAAGGTAGAAAAACAG
JMFS089F08+           CTTTCGATCAATCCCAAGACAATTTGACTGATCATTAAAAACTGGAAGGTAGAAAAACAG
JMSF022L12+           CTTTCGATCAATCCCAAGACAATTTGACTGATCATTAAAAACTGGAAGGTAGAAAAACAG
                      ____________________________________________________________
consensus             CTTTCGATCAATCCCAAGACAATTTGACTGATCATTAAAAACTGGAAGGTAGAAAAACAG
 
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JMFS089F01+           AGGATCCACAGAGACGCCCAGGATACATGATATGACAAATAGCCTATTCCACAAAACAAG
JMFS112G10+           AGGATCCACAGAGACGCCCAGGATACATGATATGACAAATAGCCTATTCCACAAAACAAG
JMFS089F08+           AGGATCCACAGAGACGCCCAGGATACATGATATGACAAATAGCCTATTCCACAAAACAAG
JMSF022L12+           AGGATCCACAGAGACGCCCAGGATACATGATATGACAAATAGCCTATTCCACAAAACAAG
                      ____________________________________________________________
consensus             AGGATCCACAGAGACGCCCAGGATACATGATATGACAAATAGCCTATTCCACAAAACAAG
 
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JMFS089F01+           GAATTTATCCTGAGGGTCAAATATCTTCTTGTCTGAAGCTTTAAGATCTTCAGGAAAAAC
JMFS112G10+           GAATTTATCCTGAGGGTCAAATATCTTCTTGTCTGAAGCTTTAAGATCTTCAGGAAAAAC
JMFS089F08+           GAATTTATCCTGAGGGTCAAATATCTTCTTGTCTGAAGCTTTAAGATCTTCAGGAAAAAC
JMSF022L12+           GAATTTATCCTGAGGGTCAAATATCTTCTTGTCTGAAGCTTTAAGATCTTCAGGAAAAAC
                      ____________________________________________________________
consensus             GAATTTATCCTGAGGGTCAAATATCTTCTTGTCTGAAGCTTTAAGATCTTCAGGAAAAAC
 
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JMFS089F01+           AGCTCGAGACACACCAAAGCCCAGAGATCGACCAATTGACTTAAGACCTTCAGAACCTTT
JMFS112G10+           AGCTCGAGACACACCAAAGCCCAGAGATCGACCAATTGACTTAAGACCTTCAGAACCTTT
JMFS089F08+           AGCTCGAGACACACCAAAGCCCAGAGATCGACCAATTGACTTAAGACCTTCAGAACCTTT
JMSF022L12+           AGCTCGAGACACACCAAAGCCCAGAGATCGACCAATTGACTTAAGACCTTCAGAACCTTT
                      ____________________________________________________________
consensus             AGCTCGAGACACACCAAAGCCCAGAGATCGACCAATTGACTTAAGACCTTCAGAACCTTT
 
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JMFS089F01+           TCTCATTCCTTTCTTGAAAGAACTTGATGTACCTGTAGTTGTAGGACCAGCACGTTTTAA
JMFS112G10+           TCTCATTCCTTTCTTGAAAGAACTTGATGTACCTGTAGTTGTAGGACCAGCACGTTTTAA
JMFS089F08+           TCTCATTCCTTTCTTGAAAGAACTTGATGTACCTGTAGTTGTAGGACCAGCACGTTTTAA
JMSF022L12+           TCTCATTCCTTTCTTGAAAGAACTTGATGTACCTGTAGTTGTAGGACCAGCACGTTTTAA
                      ____________________________________________________________
consensus             TCTCATTCCTTTCTTGAAAGAACTTGATGTACCTGTAGTTGTAGGACCAGCACGTTTTAA
 
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JMFS089F01+           ACCCTCAACACCAAAGCTACATTTGTTTGCTGCTACTGATGCTGCCGGTGAGGAAAGCCT
JMFS112G10+           ACCCTCAACACCAAAGCTACATTTGTTTGCTGCTACTGATGCTGCCGGTGAGGAAAGCCT
JMFS089F08+           ACCCTCAACACCAAAGCTACATTTGTTTGCTGCTACTGATGCTGCCGGTGAGGAAAGCCT
JMSF022L12+           ACCCTCAACACCAAAGCTACATTTGTTTGCTGCTACTGATGCTGCCGGTGAGGAAAGCCT
                      ____________________________________________________________
consensus             ACCCTCAACACCAAAGCTACATTTGTTTGCTGCTACTGATGCTGCCGGTGAGGAAAGCCT
 
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JMFS089F01+           GGAATCC                                                     
JMFS112G10+           GGAATCC                                                     
JMFS089F08+           GGAATCC                                                     
JMSF014P23+           GGAATCCAAGTCATCCAGCCTTACAAACTTTTCTCGCTGTCCACCCAGATACTGAGACTT
JMSF022L12+           GGAATCCAAGTCATCCAGCCTTACAAACTTTTCTCGCTGTCCACCCAGATACTGAGACTT
                      ____________________________________________________________
consensus             GGAATCCAAGTCATCCAGCCTTACAAACTTTTCTCGCTGTCCACCCAGATACTGAGACTT
 
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JMSF014P23+           AGCACCACAATCGAACATATTGTACAATCATAAAACACATAAACCTAAAATTACAATAAG
JMSF022L12+           AGCACCACAATCGAACATATTGTACAATCATAAAACACATAAACCTAAAATTACAATAAG
JMSF011A12+                                   CAATCATAAAACACATAAACCTAAAATTACAATAAG
                      ____________________________________________________________
consensus             AGCACCACAATCGAACATATTGTACAATCATAAAACACATAAACCTAAAATTACAATAAG
 
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JMSF014P23+           AGGTAATGAGATGAGTCCATGGTGGGGAAGCGAGGTCGCCGGCGAGTTGGTTGTGAGGTC
JMSF022L12+           AGGTAATGAGATGAGTCCATGGTGGGGAAGCGAGGTCGCCGGCGAGTTGGTTGTGAGGTC
JMSF011A12+           AGGTAATGAGATGAGTCCATGGTGGGGAAGCGAGGTCGCCGGCGAGTTGGTTGTGAGGTC
                      ____________________________________________________________
consensus             AGGTAATGAGATGAGTCCATGGTGGGGAAGCGAGGTCGCCGGCGAGTTGGTTGTGAGGTC
 
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JMSF014P23+           CGGCGGGGCGACGTGAGCGACGGATATGAAGTCAAAGTTTATCTGGAAGA          
JMSF022L12+           CGGCGGGGCGACGTGAGCGACGGATATGAAGTCAAAGTTTATCTGGAAGA          
JMSF011A12+           CGGCGGGGCGACGTGAGCGACGGATATGAAGTCAAAGTTTATCTGGAAGAGCTAATAGTT
                      ____________________________________________________________
consensus             CGGCGGGGCGACGTGAGCGACGGATATGAAGTCAAAGTTTATCTGGAAGAGCTAATAGTT
 
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JMSF011A12+           TGGGTAGACAGGTTGGACCAAAGTGGGAAGAAACGAAGTGCGAAAGTAGGGTCAACTATC
                      ____________________________________________________________
consensus             TGGGTAGACAGGTTGGACCAAAGTGGGAAGAAACGAAGTGCGAAAGTAGGGTCAACTATC