Contig 010607:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS106E09Sequence645010607 (3)gb|KDO50463.1|1e-74hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis] gb|KDO50464.1|
JMSF010M14Sequence304010607 (3)gb|KJB49108.1|6e-22hypothetical protein B456_008G101500 [Gossypium raimondii]760009820 (9)ref|XP_009629176.1|5e-43PREDICTED: UPF0202 protein At1g10490-like [Nicotiana tomentosiformis]
JMSF037F15Sequence662010607 (3)gb|KDO50463.1|3e-73hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis] gb|KDO50464.1|738009820 (9)emb|CDP12880.1|4e-52unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS106E09+                                                                    CTT
JMSF037F15+                                                                      T
                      ____________________________________________________________
consensus                                                                      CTT
 
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JMFS106E09+           TCATGAACATCCATAACCATGGTGTACAGACTTGTCAATGAGGACAAGGATCGGAGCAGT
JMSF037F15+           TCATGAACATCCATAACCATGGTGTACAGACTTGTCAATGAGGACAAGGATCGGAGCAGT
                      ____________________________________________________________
consensus             TCATGAACATCCATAACCATGGTGTACAGACTTGTCAATGAGGACAAGGATCGGAGCAGT
 
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JMFS106E09+           AAAACAATCAAACCACCACCTTCAACTGTTTCTATAGTTCTTGCCAAAAGATTGGGTGTC
JMSF037F15+           AAAACAATCAAACCACCACCTTCAACTGTTTCTATAGTTCTTGCCAAAAGATTGGGTGTC
                      ____________________________________________________________
consensus             AAAACAATCAAACCACCACCTTCAACTGTTTCTATAGTTCTTGCCAAAAGATTGGGTGTC
 
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JMFS106E09+           AAAGCCTCAAAATCCTGTAATATGCACATGCCAAAAGTGTTTCCAAGAACTCTTTCTGAA
JMSF037F15+           AAAGCCTCAAAATCCTGTAATATGCACATGCCAAAAGTGTTTCCAAGAACTCTTTCTGAA
                      ____________________________________________________________
consensus             AAAGCCTCAAAATCCTGTAATATGCACATGCCAAAAGTGTTTCCAAGAACTCTTTCTGAA
 
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JMFS106E09+           TCCTTATACAGGCAATAAGAGACACCACCAGTTTCAACAAATAGTTCAAAAGGATCTGCT
JMSF037F15+           TCCTTATACAGGCAATAAGAGACACCACCAGTTTCAACAAATAGTTCAAAAGGATCTGCT
                      ____________________________________________________________
consensus             TCCTTATACAGGCAATAAGAGACACCACCAGTTTCAACAAATAGTTCAAAAGGATCTGCT
 
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JMFS106E09+           CTCTCAGGATCAAGCAGCCCTCTCTGCATTAATTTTTTTAGTTGCTTCTTCCTTTTCTTC
JMSF037F15+           CTCTCAGGATCAAGCAGCCCTCTCTGCATTAATTTTTTTAGTTGCTTCTTCCTTTTCTTC
                      ____________________________________________________________
consensus             CTCTCAGGATCAAGCAGCCCTCTCTGCATTAATTTTTTTAGTTGCTTCTTCCTTTTCTTC
 
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JMFS106E09+           TTATGGCTGCTAAGTTCAAGCTTGTCCTTGTAGCACCAAAGGACAGTGGGGCGCGACTTC
JMSF037F15+           TTATGGCTGCTAAGTTCAAGCTTGTCCTTGTAGGACCAAAGGACAGTGGGGCGCGACTTC
JMSF010M14+                                                                   CTTC
                      ____________________________________________________________
consensus             TTATGGCTGCTAAGTTCAAGCTTGTCCTTGTAGGACCAAAGGACAGTGGGGCGCGACTTC
 
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JMFS106E09+           ACTACAGCTTTGCTTACCATGTAGTGCAGGTTCACAATCTGATCGCGAGACTTGTCACCG
JMSF037F15+           ACTACAGCTTTGCTTACCATGTAGTGCAGGTTCACAATCTGATCGCGAGACTTGTCACCG
JMSF010M14+           ACTACAGCTTTGCTTACCATGTAGTGCAGGTTCACAATCTGATCGCGAGACTTGTCACCG
                      ____________________________________________________________
consensus             ACTACAGCTTTGCTTACCATGTAGTGCAGGTTCACAATCTGATCGCGAGACTTGTCACCG
 
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JMFS106E09+           ATGATGACGAACATGGATCGATGACGGTTTTTGACGCCATTCTCGATGAGGGTTCTGATG
JMSF037F15+           ATGATGACGAACATGGATCGATGACGGTTTTTGACGCCATTCTCGATGAGGGTTCTGATG
JMSF010M14+           ATGATGACGAACATGGATCGATGACGGTTTTTGACGCCATTCTCGATGAGGGTTCTGATG
                      ____________________________________________________________
consensus             ATGATGACGAACATGGATCGATGACGGTTTTTGACGCCATTCTCGATGAGGGTTCTGATG
 
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JMFS106E09+           CGCTCGTCCACCTTCTTCCTCATTGTCTCAGGGTTTTGCTTGT-------CTGTCGTGGG
JMSF037F15+           CGCTCGTCCACCTTCTTCCTCATTGTCTCAGGGTTTTGCTTGTCTGGGGACTGTCGTGGG
JMSF010M14+           CGCTCGTCCACCTTCTTCCTCATTGTCTCAGGGTTTTGCTTGTCTGGGGACTGTCGTGGG
                      ____________________________________________________________
consensus             CGCTCGTCCACCTTCTTCCTCATTGTCTCAGGGTTTTGCTTGTCTGGGGACTGTCGTGGG
 
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JMFS106E09+           AAGAGAGACAGGAGACGAGGGAGAAGTGTCGAGTGAGCGTGAGGCGGTGACCGGAGAACC
JMSF037F15+           AAGAGAGACAGGAGACGAGGGAGAAGTGTCGAGTGAGCGTGAGGCGGTGACCGGAGAACC
JMSF010M14+           AAGAGAGACAGGAGACGAGGGAGAAGTGTCGAGTGAGCGTGAGGCGGTGACCGGAGAACC
                      ____________________________________________________________
consensus             AAGAGAGACAGGAGACGAGGGAGAAGTGTCGAGTGAGCGTGAGGCGGTGACCGGAGAACC
 
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JMFS106E09+           GTCGTGCGTTACTGCGCCGTCTGTGGGTTGTGGCTGTGGAATGTTCGAA           
JMSF037F15+           GTCGTGCGTTACTGCGCCGTCTGTGGGTTGTGGCTGTGGAATGTTCGAATGCAGAAGCC 
JMSF010M14+           GTCGTGCGTTACTGCGCCGTCTGTGGGTTGTGGCTGTGGAATGTTCGAATGCAGAAGCCC
                      ____________________________________________________________
consensus             GTCGTGCGTTACTGCGCCGTCTGTGGGTTGTGGCTGTGGAATGTTCGAATGCAGAAGCCC