Contig 010563:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004I17Sequence396004939 (3)346010563 (4)
JMSF004K19Sequence327010563 (4)
JMSF038E17Sequence651010563 (4)ref|XP_009776078.1|7e-20PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana sylvestris]901010563 (4)ref|XP_009776078.1|4e-26PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF004I17- ATCTCAATACAGAATC
rJMSF038E17- ACATGGTTTACAATAAATCTCAATACAAAATC
                      ____________________________________________________________
consensus ACATGGTTTACAATAAATCTCAATACAGAATC
 
. : . : . : . : . : . :
rJMSF004I17- ATCATCATCATCATCATCATCATCTCTCCAAATAAACTCATTTGGAGAAACAAAATTCTG
rJMSF038E17- ATCATCATCATCATCATCATCATCTCTCCAAATAAACTCATTTGGAGAAACAAAATTCTG
                      ____________________________________________________________
consensus ATCATCATCATCATCATCATCATCTCTCCAAATAAACTCATTTGGAGAAACAAAATTCTG
 
. : . : . : . : . : . :
rJMSF004I17- AACATAGGAACACATAGCGGCAGTATGATTTCTCTGTCCTGATTCTGCTTTCAAGAAATT
rJMSF038E17- AACATAGGAACACATAGCGGCAGTATGATTTCTCTGTCCTGATTCTGCTTTCAAGAAATT
                      ____________________________________________________________
consensus AACATAGGAACACATAGCGGCAGTATGATTTCTCTGTCCTGATTCTGCTTTCAAGAAATT
 
. : . : . : . : . : . :
rJMSF004I17- CTCCAGCTTCACATTATAAACTAATGCTCCCCACCAACCATACAAACAGCTCCCTATCAG
rJMSF038E17- CTCCAGCTTCACATTATAAACTAATGCTCCCCACCAACCATACAAACAGCTCCCTATCAG
                      ____________________________________________________________
consensus CTCCAGCTTCACATTATAAACTAATGCTCCCCACCAACCATACAAACAGCTCCCTATCAG
 
. : . : . : . : . : . :
rJMSF004I17- GGCTTGTGTATTGCATTTGGAAGGGTAGAATGTAAAGTCACTATGATAACCAGATCTGAA
rJMSF038E17- GGCTTGTGTATTGCATTTGGAAGGGTAGAATGTAAAGTCACTATGATAACCAGATCTGAA
                      ____________________________________________________________
consensus GGCTTGTGTATTGCATTTGGAAGGGTAGAATGTAAAGTCACTATGATAACCAGATCTGAA
 
. : . : . : . : . : . :
rJMSF004I17- CTGAGAGGCATTGATCACAAACTGACTCATCCATGAATTCTTCACTCCATATTCCTTCAT
rJMSF038E17- CTGAGAGGCATTGATCACAAACTGACTCATCCATGAATTCTTCACTCCATATTCCTTCAT
                      ____________________________________________________________
consensus CTGAGAGGCATTGATCACAAACTGACTCATCCATGAATTCTTCACTCCATATTCCTTCAT
 
. : . : . : . : . : . :
rJMSF004I17- NACCAACACTTCAACCGTTTCCTTCGTCCT
rJMSF038E17- AACCAACACTTCAACCGTTTCCTTCGTCCTCTCGCGAGCCAGGCAGAGATAACGACTGTC
                      ____________________________________________________________
consensus AACCAACACTTCAACCGTTTCCTTCGTCCTCTCGCGAGCCAGGCAGAGATAACGACTGTC
 
. : . : . : . : . : . :
rJMSF038E17- AATGATTCCCAACCCAAAAATTGCACAACTTTCCACCGGAAAACTGGGGGTGGGCAGCTC
                      ____________________________________________________________
consensus AATGATTCCCAACCCAAAAATTGCACAACTTTCCACCGGAAAACTGGGGGTGGGCAGCTC
 
. : . : . : . : . : . :
rJMSF038E17- TTTGAATTCATCGCTCACCGCATCAAAATAAACCACCTTTTTGCATCTCTCTGAGGAAGA
JMSF038E17+ TCTGAGGAAGA
                      ____________________________________________________________
consensus TTTGAATTCATCGCTCACCGCATCAAAATAAACCACCTTTTTGCATCTCTCTGAGGAAGA
 
. : . : . : . : . : . :
rJMSF038E17- CCAATCCCTAGCAGATTGAGCTACCCTCCAATGGAGTGTGTTGTGAAAGTTAACCCCGCC
JMSF038E17+ CCAATCCCTAGCAGATTGAGCTACCCTCCAATGGAGTGTGTTGTGAAAGTTAACCCCGCC
                      ____________________________________________________________
consensus CCAATCCCTAGCAGATTGAGCTACCCTCCAATGGAGTGTGTTGTGAAAGTTAACCCCGCC
 
. : . : . : . : . : . :
rJMSF038E17- GTCTCTAACGGACTCTGCACAGTGGGGAAACAACACCCTTCGCCACTCTTTGTTCTTGAG
JMSF038E17+ GTCTCTAACGGACTCTGCACAGTGGGGAAACAACACCCTTCGCCACTCTTTGTTCTTGAG
                      ____________________________________________________________
consensus GTCTCTAACGGACTCTGCACAGTGGGGAAACAACACCCTTCGCCACTCTTTGTTCTTGAG
 
. : . : . : . : . : . :
rJMSF038E17- GCTTGCAACGAGAACAGTTCCATCATCATCATCGAGTAACAGAACCACCTTGTAATCTCC
JMSF038E17+ GCTTGCAACGAGAACAGTTCCATCATCATCATCGAGTAACAGAACCACCTTGTAATCTCC
                      ____________________________________________________________
consensus GCTTGCAACGAGAACAGTTCCATCATCATCATCGAGTAACAGAACCACCTTGTAATCTCC
 
. : . : . : . : . : . :
rJMSF038E17- CGTGGACGGGACATAACAGAGCCCTGAGGCAGAGACCACATTATGACGATGCCACATAGA
JMSF038E17+ CGTGGACGGGACATAACAGAGCCCTGAGGCAGAGACCACATTATGACGATGCCACATAGA
                      ____________________________________________________________
consensus CGTGGACGGGACATAACAGAGCCCTGAGGCAGAGACCACATTATGACGATGCCACATAGA
 
. : . : . : . : . : . :
rJMSF038E17- AGGCTTCAATAGTTGCAGCTCAAGCACTTTTGTGCAGCAGCGAGTGGAGGGATTCCACAA
JMSF038E17+ AGGCTTCAATAGTTGCAGCTCAAGCACTTTTGTGCAGCAGCGAGTGGAGGGATTCCACAA
                      ____________________________________________________________
consensus AGGCTTCAATAGTTGCAGCTCAAGCACTTTTGTGCAGCAGCGAGTGGAGGGATTCCACAA
 
. : . : . : . : . : . :
rJMSF038E17- CAGAATATGTTTCCACACGGAGAAAAGCACGAGGCCGTTGCAAGAACACCAAACGCCGGA
JMSF038E17+ CAGAATATGTTTCCACACGGAGAAAAGCACGAGGCCGTTGCAAGAACACCAAACGCCGGA
                      ____________________________________________________________
consensus CAGAATATGTTTCCACACGGAGAAAAGCACGAGGCCGTTGCAAGAACACCAAACGCCGGA
 
. : . : . : . : . : . :
rJMSF038E17- CCACCAACCGCCCTCTTCCGCTCCCCGCC
JMSF038E17+ CCACCAACCGCCCTCTTCCGCTCCCCGCCGATTGAATAGCGTTTTGATGCAGAGAGTGTC
                      ____________________________________________________________
consensus CCACCAACCGCCCTCTTCCGCTCCCCGCCGATTGAATAGCGTTTTGATGCAGAGAGTGTC
 
. : . : . : . : . : . :
JMSF038E17+ GGTCGTTATGGATGTAAAGGCTAAGCCGCCGCCGGACGCCGCCGCCACAAGCACTCGCCG
                      ____________________________________________________________
consensus GGTCGTTATGGATGTAAAGGCTAAGCCGCCGCCGGACGCCGCCGCCACAAGCACTCGCCG
 
. : . : . : . : . : . :
JMSF038E17+ TCCTCCGCGGTAGGAGAGCTTGAAATCGGGGTCTTCTATTGTGGATCGCCATTCTTTGCA
JMSF004K19+ TTCTATTGTGGATCGCCATTCTTNGCA
                      ____________________________________________________________
consensus TCCTCCGCGGTAGGAGAGCTTGAAATCGGGGTCTTCTATTGTGGATCGCCATTCTTTGCA
 
. : . : . : . : . : . :
JMSF038E17+ TACGCCTTCACATCGGATCAGAGCTTTCATCTCCAATTTCAAAAGTATACAGCGAATTAT
JMSF004K19+ TACGCCTTCACATCGGATCAGAGCTTTCATCTCCAATTTCAAAAGTATACAGCGAATTAT
                      ____________________________________________________________
consensus TACGCCTTCACATCGGATCAGAGCTTTCATCTCCAATTTCAAAAGTATACAGCGAATTAT
 
. : . : . : . : . : . :
JMSF038E17+ CTCAATCGGTACGTGCGGCAGCGATCGAGCTTTCTTTGC
JMSF004K19+ CTCAATCGGTATGTGCGGCAGCGATCGAGCTTTCTTTGCGGCTGAAACTTCCATGGTGAT
                      ____________________________________________________________
consensus CTCAATCGGTATGTGCGGCAGCGATCGAGCTTTCTTTGCGGCTGAAACTTCCATGGTGAT
 
. : . : . : . : . : . :
JMSF004K19+ CCAATAATTATATCGATGAGAATGAATGAATGAATGCAGCTACTTAGTTGAGAGGATCGA
                      ____________________________________________________________
consensus CCAATAATTATATCGATGAGAATGAATGAATGAATGCAGCTACTTAGTTGAGAGGATCGA
 
. : . : . : . : . : . :
JMSF004K19+ TCGGAAATTTATTAGCTAGGGTTCACCCGTTTTCCGATTGGAATTGAATCAATACTCATT
                      ____________________________________________________________
consensus TCGGAAATTTATTAGCTAGGGTTCACCCGTTTTCCGATTGGAATTGAATCAATACTCATT
 
. : . : . : . : . : . :
JMSF004K19+ ATATACATAATAAATAAATCATATAAAATTCTCCTGATTCGGCTTGGATCAGGAATGACC
                      ____________________________________________________________
consensus ATATACATAATAAATAAATCATATAAAATTCTCCTGATTCGGCTTGGATCAGGAATGACC