Contig 010525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS027B04Sequence624010525 (8)gb|AJA72481.1|1e-63phytochrome A [Ipomoea purpurea]
JMFS040G10Sequence627010525 (8)gb|AJA72481.1|1e-127phytochrome A [Ipomoea purpurea]
JMFS061B09Sequence595010525 (8)
JMFS071B02Sequence621010525 (8)gb|AJA72481.1|2e-56phytochrome A [Ipomoea purpurea]
JMFS097F05Sequence627010525 (8)gb|AGT50253.1|6e-19phytochrome A1 [Ipomoea batatas]
JMFS140C01Sequence627010525 (8)gb|AJA72481.1|2e-84phytochrome A [Ipomoea purpurea]
JMFS148F10Sequence619010525 (8)
JMFS154B03Sequence626010525 (8)

Alignment

This contig is upended


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JMFS040G10+                            GCCACTTGGCAAGGACTGCAACCGAGCAATAGCTTNTGCTGCA
                      ____________________________________________________________
consensus                              GCCACTTGGCAAGGACTGCAACCGAGCAATAGCTTNTGCTGCA
 
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JMFS040G10+           AGTTTATACGATTGCAACGCACCAGCAGCAGTCATGGGTACTTCATATGGTTTGACGGGC
                      ____________________________________________________________
consensus             AGTTTATACGATTGCAACGCACCAGCAGCAGTCATGGGTACTTCATATGGTTTGACGGGC
 
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JMFS040G10+           TCAAAGTCAATAATCAAGCTACCTGTTACCCTATGGATAATGGCATAAAATGGCTTCCCC
                      ____________________________________________________________
consensus             TCAAAGTCAATAATCAAGCTACCTGTTACCCTATGGATAATGGCATAAAATGGCTTCCCC
 
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JMFS040G10+           GAGGTTTTGCAGTGAACAAGGATAGGATTTAACAGAGAAACCTCTCCAAATCCCAAGGCC
JMFS140C01+                       TGAACAAGGATAGGATTTAACAGAGAAACCTCTCCAAATCCCAAGGCC
                      ____________________________________________________________
consensus             GAGGTTTTGCAGTGAACAAGGATAGGATTTAACAGAGAAACCTCTCCAAATCCCAAGGCC
 
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JMFS040G10+           TTCTGTAGTGCTGCTGCACTGGGACTGGTGAAAATGCTTCGAATATCAGTCCCAATACCA
JMFS140C01+           TTCTGTAGTGCTGCTGCACTGGGACTGGTGAAAATGCTTCGAATATCAGTCCCAATACCA
JMFS027B04+                                                       ATCAGTCCCAATACCA
                      ____________________________________________________________
consensus             TTCTGTAGTGCTGCTGCACTGGGACTGGTGAAAATGCTTCGAATATCAGTCCCAATACCA
 
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JMFS040G10+           AGAGCGGGATGGTCTCCAACACTCGGAACAGCATGGCTGACCATGGTAAGCATCTCGGAA
JMFS140C01+           AGAGCGGGATGGTCTCCAACACTCGGAACAGCATGGCTGACCATGGTAAGCATCTCGGAA
JMFS027B04+           AGAGCGGGATGGTCTCCAACACTCGGAACAGCATGGCTGACCATGGTAAGCATCTCGGAA
JMFS071B02+                      GTCTCCAACACTCGGAACAGCATGGCTGACCATGGTAAGCATCTCGGAA
                      ____________________________________________________________
consensus             AGAGCGGGATGGTCTCCAACACTCGGAACAGCATGGCTGACCATGGTAAGCATCTCGGAA
 
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JMFS040G10+           GCGTTTTCACTGAATGCTATGACTTTAAAAGTTTTCTCGTCCAGAGCTAACAAACAGCCA
JMFS140C01+           GCGTTTTCACTGAATGCTATGACTTTAAAAGTTTTCTCGTCCAGAGCTAACAAACAGCCA
JMFS027B04+           GCGTTTTCACTGAATGCTATGACTTTAAAAGTTTTCTCGTCCAGAGCTAACAAACAGCCA
JMFS071B02+           GCGTTTTCACTGAATGCTATGACTTTAAAAGTTTTCTCGTCCAGAGCTAACAAACAGCCA
                      ____________________________________________________________
consensus             GCGTTTTCACTGAATGCTATGACTTTAAAAGTTTTCTCGTCCAGAGCTAACAAACAGCCA
 
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JMFS040G10+           AATGGCTGGATGAATTTGGCTTTTTGGATCTGATGGAGATAAGCCGTGGTTACTTTGTCA
JMFS140C01+           AATGGCTGGATGAATTTGGCTTTTTGGATCTGATGGAGATAAGCCGTGGTTACTTTGTCA
JMFS027B04+           AATGGCTGGATGAATTTGGCTTTTTGGATCTGATGGAGATAAGCCGTGGTTACTTTGTCA
JMFS071B02+           AATGGCTGGATGAATTTGGCTTTTTGGATCTGATGGAGATAAGCCGTGGTTACTTTGTCA
JMFS097F05+                                                         TGGTTACTTTGTCA
                      ____________________________________________________________
consensus             AATGGCTGGATGAATTTGGCTTTTTGGATCTGATGGAGATAAGCCGTGGTTACTTTGTCA
 
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JMFS040G10+           GACCTAGGTTTCTGCACTCCCACATCCACACTCGTGACTCGGACTGAGCTAGAGTAATCA
JMFS140C01+           GACCTAGGTTTCTGCACTCCCACATCCACACTCGTGACTCGGACTGAGCTAGAGTAATCA
JMFS027B04+           GACCTAGGTTTCTGCACTCCCACATCCACACTCGTGACTCGGACTGAGCTAGAGTAATCA
JMFS071B02+           GACCTAGGTTTCTGCACTCCCACATCCACACTCGTGACTCGGACTGAGCTAGAGTAATCA
JMFS097F05+           GACCTAGGTTTCTGCACTCCCACATCCACACTCGTGACTCGGACTGAGCTAGAGTAATCA
                      ____________________________________________________________
consensus             GACCTAGGTTTCTGCACTCCCACATCCACACTCGTGACTCGGACTGAGCTAGAGTAATCA
 
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JMFS040G10+           AAGGAATCCCCCGATTCCTCAAACTCTGCGTGGAGCTTTGCATCTATCGAGGTTTGTGCT
JMFS140C01+           AAGGAATCCCCCGATTCCTCAAACTCTGCGTGGAGCTTTGCATCTATCGAGGTTTGTGCT
JMFS027B04+           AAGGAATCCCCCGATTCCTCAAACTCTGCGTGGAGCTTTGCATCTATCGAGGTTTGTGCT
JMFS071B02+           AAGGAATCCCCCGATTCCTCAAACTCTGCGTGGAGCTTTGCATCTATCGAGGTTTGTGCT
JMFS097F05+           AAGGAATCCCCCGATTCCTCAAACTCTGCGTGGAGCTTTGCATCTATCGAGGTTTGTGCT
JMFS148F10+                                           GAGCTTTGCATCTATCGAGGTTTGTGCT
                      ____________________________________________________________
consensus             AAGGAATCCCCCGATTCCTCAAACTCTGCGTGGAGCTTTGCATCTATCGAGGTTTGTGCT
 
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JMFS040G10+           ATGATCCTAGCACTATGTTTTGATCTCGCTGAATTACTAGAAGA                
JMFS140C01+           ATGATCCTAGCACTATGTTTTGATCTCGCTGAATTACTAGAAGACTGACTAGGTCTGGAA
JMFS027B04+           ATGATCCTAGCACTATGTTTTGATCTCGCTGAATTACTAGAAGACTGACTAGGTCTGGAA
JMFS071B02+           ATGATCCTAGCACTATGTTTTGATCTCGCTGAATTACTAGAAGACTGACTAGGTCTGGAA
JMFS097F05+           ATGATCCTAGCACTATGTTTTGATCTCGCTGAATTACTAGAAGACTGACTAGGTCTGGAA
JMFS148F10+           ATGATCCTAGCACTATGTTTTGATCTCGCTGAATTACTAGAAGACTGACTAGGTCTGGAA
                      ____________________________________________________________
consensus             ATGATCCTAGCACTATGTTTTGATCTCGCTGAATTACTAGAAGACTGACTAGGTCTGGAA
 
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JMFS140C01+           GTTGACATTTCAATTCAAATCTTTTTTTTTCTGAGACTGCAGAGAGTCAAGAGAGCAGTA
JMFS027B04+           GTTGACATTTCAATTCAAATCTTTTTTTTTCTGAGACTGCAGAGAGTCAAGAGAGCAGTA
JMFS071B02+           GTTGACATTTCAATTCAAATCTTTTTTTTTCTGAGACTGCAGAGAGTCAAGAGAGCAGTA
JMFS097F05+           GTTGACATTTCAATTCAAATCTTTTTTTTTCTGAGACTGCAGAGAGTCAAGAGAGCAGTA
JMFS148F10+           GTTGACATTTCAATTCAAATCTTTTTTTTTCTGAGACTGCAGAGAGTCAAGAGAGCAGTA
JMFS154B03+                                             GACTGCAGAGAGTCAAGAGAGCAGTA
                      ____________________________________________________________
consensus             GTTGACATTTCAATTCAAATCTTTTTTTTTCTGAGACTGCAGAGAGTCAAGAGAGCAGTA
 
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JMFS140C01+           AAAGAGATGAAATCTTCAAACTACAAAAGAGGCAGGAGTTTGAGGTGCCAATAAATGCAA
JMFS027B04+           AAAGAGATGAAATCTTCAAACTACAAAAGAGGCAGGAGTTTGAGGTGCCAATAAATGCAA
JMFS071B02+           AAAGAGATGAAATCTTCAAACTACAAAAGAGGCAGGAGTTTGAGGTGCCAATAAATGCAA
JMFS097F05+           AAAGAGATGAAATCTTCAAACTACAAAAGAGGCAGGAGTTTGAGGTGCCAATAAATGCAA
JMFS148F10+           AAAGAGATGAAATCTTCAAACTACAAAAGAGGCAGGAGTTTGAGGTGCCAATAAATGCAA
JMFS154B03+           AAAGAGATGAAATCTTCAAACTACAAAAGAGGCAGGAGTTTGAGGTGCCAATAAATGCAA
                      ____________________________________________________________
consensus             AAAGAGATGAAATCTTCAAACTACAAAAGAGGCAGGAGTTTGAGGTGCCAATAAATGCAA
 
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JMFS140C01+           GGAAACTCAAACCCCAAGAAGGGAATTACAGAAACCCAA                     
JMFS027B04+           GGAAACTCAAACCCCAAGAAGGGAATTACAGAAACCCAAACACCTCCTTAATGGAAAAGC
JMFS071B02+           GGAAACTCAAACCCCAAGAAGGGAATTACAGAAACCCAAACACCTCCTTAATGGAAAAGC
JMFS097F05+           GGAAACTCAAACCCCAAGAAGGGAATTACAGAAACCCAAACACCTCCTTAATGGAAAAGC
JMFS148F10+           GGAAACTCAAACCCCAAGAAGGGAATTACAGAAACCCAAACACCTCCTTAATGGAAAAGC
JMFS154B03+           GGAAACTCAAACCCCAAGAAGGGAATTACAGAAACCCAAACACCTCCTTAATGGAAAAGC
                      ____________________________________________________________
consensus             GGAAACTCAAACCCCAAGAAGGGAATTACAGAAACCCAAACACCTCCTTAATGGAAAAGC
 
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JMFS027B04+           CCAGCTCCCATTCTTCCACCCAAGGTATCGATCACCGCCTCCCTCTGATCCTTCCAAGGG
JMFS071B02+           CCAGCTCCCATTCTTCCACCCAAGGTATCGATCACCGCCTCCCTCTGATCCTTCCAAGGG
JMFS097F05+           CCAGCTCCCATTCTTCCACCCAAGGTATCGATCACCGCCTCCCTCTGATCCTTCCAAGGG
JMFS148F10+           CCAGCTCCCATTCTTCCACCCAAGGTATCGATCACCGCCTCCCTCTGATCCTTCCAAGGG
JMFS154B03+           CCAGCTCCCATTCTTCCACCCAAGGTATCGATCACCGCCTCCCTCTGATCCTTCCAAGGG
                      ____________________________________________________________
consensus             CCAGCTCCCATTCTTCCACCCAAGGTATCGATCACCGCCTCCCTCTGATCCTTCCAAGGG
 
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JMFS027B04+           CAAATCAG                                                    
JMFS071B02+           CAAATCAGGGACCACACACCACAGCTCAAGCA                            
JMFS097F05+           CAAATCAGGGACCACACACCACAGCTCAAGCACACAGAGTGCTCCCCTAGAATATTGTGA
JMFS148F10+           CAAATCAGGGACCACACACCACAGCTCAAGCACACAGAGTGCTCCCCTAGAATATTGTGA
JMFS061B09+                                                         CTAGAATATTGTGA
JMFS154B03+           CAAATCAGGGACCACACACCACAGCTCAAGCACACAGAGTGCTCCCCTAGAATATTGTGA
                      ____________________________________________________________
consensus             CAAATCAGGGACCACACACCACAGCTCAAGCACACAGAGTGCTCCCCTAGAATATTGTGA
 
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JMFS097F05+           ATTGCGCAGCTCTGTACTTCCCTAACATAGTTAATTCTTGCAGATTGGTCCTCCCAAAAA
JMFS148F10+           ATTGCGCAGCTCTGTACTTCCCTAACATAGTTAATTCTTGCAGATTGGTCCTCCCAAAAA
JMFS061B09+           ATTGCGCAGCTCTGTACTTCCCTAACATAGTTAATTCTTGCAGATTGGTCCTCCCAAAAA
JMFS154B03+           ATTGCGCAGCTCTGTACTTCCCTAACATAGTTAATTCTTGCAGATTGGTCCTCCCAAAAA
                      ____________________________________________________________
consensus             ATTGCGCAGCTCTGTACTTCCCTAACATAGTTAATTCTTGCAGATTGGTCCTCCCAAAAA
 
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JMFS097F05+           TCAGCACAAGCCTCAATTTTCATTTGGCCTCCATTTGTACCATACTAAATACATTTATTT
JMFS148F10+           TCAGCACAAGCCTCAATTTTCATTTGGCCTCCATTTGTACCATACTAAATACATTTATTT
JMFS061B09+           TCAGCACAAGCCTCAATTTTCATTTGGCCTCCATTTGTACCATACTAAATACATTTATTT
JMFS154B03+           TCAGCACAAGCCTCAATTTTCATTTGGCCTCCATTTGTACCATACTAAATACATTTATTT
                      ____________________________________________________________
consensus             TCAGCACAAGCCTCAATTTTCATTTGGCCTCCATTTGTACCATACTAAATACATTTATTT
 
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JMFS097F05+           GGAGATCAATAAA                                               
JMFS148F10+           GGAGATCAATAAACGAGGCTCTCGAATAAGAAATGAACAACAAAGCCAAAAGGTTATGGA
JMFS061B09+           GGAGATCAATAAACGAGGCTCTCGAATAAGAAATGAACAACAAAGCCAAAAGGTTATGGA
JMFS154B03+           GGAGATCAATAAACGAGGCTCTCGAATAAGAAATGAACAACAAAGCCAAAAGGTTATGGA
                      ____________________________________________________________
consensus             GGAGATCAATAAACGAGGCTCTCGAATAAGAAATGAACAACAAAGCCAAAAGGTTATGGA
 
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JMFS148F10+           TGTCACGTGAAAACCTCATCTTCGTTATCTTCCTAGAGAGAGGGGGATGAT         
JMFS061B09+           TGTCACGTGAAAACCTCATCTTCGTTATCTTCCTAGAGAGAGGGGGATGATTCTGACAGG
JMFS154B03+           TGTCACGTGAAAACCTCATCTTCGTTATCTTCCTAGAGAGAGGGGGATGATTCTGACAGG
                      ____________________________________________________________
consensus             TGTCACGTGAAAACCTCATCTTCGTTATCTTCCTAGAGAGAGGGGGATGATTCTGACAGG
 
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JMFS061B09+           GTTTTGAGAAAGATTGAGTGAGAAGAGGAGAAGAAGATGAAGGAGATTGCTGGGCAAGAG
JMFS154B03+           GTTTTGAGAAAGATTGAGTGAGAAGAGGAGAAGAAGATGAAGGAGATTGCTGGGCAAGAG
                      ____________________________________________________________
consensus             GTTTTGAGAAAGATTGAGTGAGAAGAGGAGAAGAAGATGAAGGAGATTGCTGGGCAAGAG
 
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JMFS061B09+           ACGGGAGTGGGTCAGATTCCCAGATTAAGCGGCTACTCGGCACCCAATCAG         
JMFS154B03+           ACGGGAGTGGGTCAGATTCCCAGATTAAGCGGCTACTCGGCACCCAATCAGCACAATTCC
                      ____________________________________________________________
consensus             ACGGGAGTGGGTCAGATTCCCAGATTAAGCGGCTACTCGGCACCCAATCAGCACAATTCC