Contig 010515:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS012A09Sequence558010515 (7)ref|XP_009628770.1|2e-24PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic [Nicotia
JMFS020G05Sequence635010515 (7)ref|XP_009628770.1|1e-26PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic [Nicotia
JMFS049C08Sequence611010515 (7)ref|XP_009628770.1|1e-27PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic [Nicotia
JMFS077G08Sequence622010515 (7)ref|XP_009628770.1|5e-24PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic [Nicotia
JMFS116F11Sequence591010515 (7)ref|XP_009628770.1|3e-24PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic [Nicotia
JMFS143D09Sequence626010515 (7)
JMSF020B19Sequence661010515 (7)ref|XP_009628770.1|3e-20PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic [Nicotia438011444 (6)ref|XP_004243593.1|3e-62PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco

Alignment

This contig is upended


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JMFS012A09+                                                                 AAGTTT
JMFS049C08+                                     CGAGGCATGTCCTTTTTACCTG-TTGAGAAGTTT
JMFS020G05+              TCTTGTCCAAGGTTGCNCCGTTACGAGGCATGTCCTTTTTACCTGTTTGAGAAGTTT
                      ____________________________________________________________
consensus                TCTTGTCCAAGGTTGCNCCGTTACGAGGCATGTCCTTTTTACCTGTTTGAGAAGTTT
 
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JMFS012A09+           CAACANAATGTTTGCTTGCAGCTAATTGTGGATATTCTTCCAAGTCAAGAGTTTCTTGAG
JMFS049C08+           CAACAAAATGTTTGCTTGCAGCTAATTGTGGATATTCTTCCAAGTCAAGAGTTTCTTGAG
JMFS020G05+           CAACAAAATGTTTGCTTGCAGCTAATTGTGGATATTCTTCCAAGTCAAGAGTTTCTTGAG
JMFS116F11+                     TTTGCTTGCAGCTAATTGTGGATATTCTTCCAAGTCAAGAGTTTCTTGAG
JMFS077G08+                             CAGCTAATTGTGGATATTCTTCCAAGTCAAGAGTTTCTTGAG
                      ____________________________________________________________
consensus             CAACAAAATGTTTGCTTGCAGCTAATTGTGGATATTCTTCCAAGTCAAGAGTTTCTTGAG
 
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JMFS012A09+           CACTTGAAGATAATACTCCATTATAGTCGGCATCAGTGTCTTCATGGGTTGGAGCAATAT
JMFS049C08+           CACTTGAAGATAATACTCCATTATAGTCGGCATCAGTGTCTTCATGGGTTGGAGCAATAT
JMFS020G05+           CACTTGAAGATAATACTCCATTATAGTCGGCATCAGTGTCTTCATGGGTTGCAGCAATAT
JMFS116F11+           CACTTGAAGATAATACTCCATTATAGTCGGCATCAGTGTCTTCATGGGTTGGAGCAATAT
JMFS077G08+           CACTTGAAGATAATACTCCATTATAGTCGGCATCAGTGTCTTCATGGGTTGGAGCAATAT
JMSF020B19+                                   AGTCGGCATCAGTGTCTTCATGGGTTGGAGCAATAT
                      ____________________________________________________________
consensus             CACTTGAAGATAATACTCCATTATAGTCGGCATCAGTGTCTTCATGGGTTGGAGCAATAT
 
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JMFS012A09+           CCGCACTTGCAAAACTGCCCTCCCCACCTTTAACACTACTATCTGGGTCAAGCAGGCTAC
JMFS049C08+           CCGCACTTGCAAAACTGCCCTCCCCACCTTTAACACTACTATCTGGGTCAAGCAGGCTAC
JMFS020G05+           CCGCACTTGCAAAACTGCCCTCCCCACCTTTAACACTACTATCTGGGTCAAGCAGGCTAC
JMFS116F11+           CCGCACTTGCAAAACTGCCCTCCCCACCTTTAACACTACTATCTGGGTCAAGCAGGCTAC
JMFS077G08+           CCGCACTTGCAAAACTGCCCTCCCCACCTTTAACACTACTATCTGGGTCAAGCAGGCTAC
JMSF020B19+           ACGCACTTGCAAAACTGCCCTCCCCACCTTTAACACTACTATCTGGGTCAAGCAGGCTAC
                      ____________________________________________________________
consensus             CCGCACTTGCAAAACTGCCCTCCCCACCTTTAACACTACTATCTGGGTCAAGCAGGCTAC
 
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JMFS012A09+           TTTTTATTGAAGCCACTAATTTCTTTCTTTCAGCAATCTGTTGAAGTAGGTCTTTCTGTA
JMFS049C08+           TTTTTATTGAAGCCACTAATTTCTTTCTTTCAGCAATCTGTTGAAGTAGGTCTTTCTGTA
JMFS020G05+           TTTTTATTGAAGCCACTAATTTCTTTCTTTCAGCAATCTGTTGAAGTAGGTCTTTCTGTA
JMFS116F11+           TTTTTATTGAAGCCACTAATTTCTTTCTTTCAGCAATCTGTTGAAGTAGGTCTTTCTGTA
JMFS077G08+           TTTTTATTGAAGCCACTAATTTCTTTCTTTCAGCAATCTGTTGAAGTAGGTCTTTCTGTA
JMSF020B19+           TTTTTATTGAAGCCACTAATTTCTTTCTTTCAGCAATCTGTTGAAGTAGGTCTTTCTGTA
                      ____________________________________________________________
consensus             TTTTTATTGAAGCCACTAATTTCTTTCTTTCAGCAATCTGTTGAAGTAGGTCTTTCTGTA
 
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JMFS012A09+           TGGTTAAAACCTTCTTGCTCTTTTCAATCGTACTCTCCAAAGCATTCTCCGATTCTTCAC
JMFS049C08+           TGGTTAAAACCTTCTTGCTCTTTTCAATCGTACTCTCCAAAGCATTCTCCGATTCTTCAC
JMFS020G05+           TGGTTAAAACCTTCTTGCTCTTTTCAATCGTACTCTCCAAAGCATTCTCCGATTCTTCAC
JMFS116F11+           TGGTTAAAACCTTCTTGCTCTTTTCAATCGTACTCTCCAAAGCATTCTCCGATTCTTCAC
JMFS077G08+           TGGTTAAAACCTTCTTGCTCTTTTCAATCGTACTCTCCAAAGCATTCTCCGATTCTTCAC
JMSF020B19+           TGGTTAAAACCTTCTTGCTCTTTTCAATCGTACTCTCCAAAGCATTCTCCGATTCTTCAC
JMFS143D09+                                             CTCCAAAGCATTCTCCGATTCTTCAC
                      ____________________________________________________________
consensus             TGGTTAAAACCTTCTTGCTCTTTTCAATCGTACTCTCCAAAGCATTCTCCGATTCTTCAC
 
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JMFS012A09+           TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
JMFS049C08+           TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
JMFS020G05+           TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
JMFS116F11+           TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
JMFS077G08+           TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
JMSF020B19+           TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
JMFS143D09+           TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
                      ____________________________________________________________
consensus             TGTCGGCATCGCCTTTATCCGCCGCTCTTACTCGCATAATGCTCCCCATTTGATGCCTGC
 
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JMFS012A09+           TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
JMFS049C08+           TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
JMFS020G05+           TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
JMFS116F11+           TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
JMFS077G08+           TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
JMSF020B19+           TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
JMFS143D09+           TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
                      ____________________________________________________________
consensus             TGCGCCCCTGGCCAAGAGACACCCTCGCGACAGCTTCATTCAAAATTCTGGGGAACACGA
 
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JMFS012A09+           CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
JMFS049C08+           CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
JMFS020G05+           CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
JMFS116F11+           CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
JMFS077G08+           CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
JMSF020B19+           CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
JMFS143D09+           CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
                      ____________________________________________________________
consensus             CTAAGGAATCAGGAGAAGCTCCATAATAGGGGGATTTTCTCGGACGAGGTGTGAACAGGG
 
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JMFS012A09+           GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
JMFS049C08+           GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
JMFS020G05+           GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
JMFS116F11+           GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
JMFS077G08+           GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
JMSF020B19+           GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
JMFS143D09+           GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
                      ____________________________________________________________
consensus             GAAGCGTGGACCGGATAACTGAGCTCTCCATCACAATTCACAGAGATCAGAAGGTGATCG
 
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JMFS012A09+           CAAGGCGTTCGA                                                
JMFS049C08+           CAAGGCGTTCGATGTGTTGCCTCAACGAAGTGA                           
JMFS020G05+           CAAGGCGTTCGATGTGTTGCCTCAACGAAGTGACTCCG                      
JMFS116F11+           CAAGGCGTTCGATGTGTTGCCTCAACGAAGTGACTCCG                      
JMFS077G08+           CAAGGCGTTCGATGTGTTGCCTCAACGAAGTGACTCCGATCAGAGAAGAAGAAGCGAAGA
JMSF020B19+           CAAGGCGTTCGATGTGTTGCCTCAACGAAGTGACTCCGATCAGAGAAGAAGAAGCGAAGA
JMFS143D09+           CAAGGCGTTCGATGTGTTGCCTCAACGAAGTGACTCCGATCAGAGAAGAAGAAGCGAAGA
                      ____________________________________________________________
consensus             CAAGGCGTTCGATGTGTTGCCTCAACGAAGTGACTCCGATCAGAGAAGAAGAAGCGAAGA
 
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JMFS077G08+           TGGAGTAGAAGCGAGTGAGAGAGCAACAAGAGGGAAGTGA                    
JMSF020B19+           TGGAGTAGAAGCGAGTGAGAGAGCAACAAGAGGGAAGTGAAGTGACGGCAGAAAAGATTT
JMFS143D09+           TGGAGTAGAAGCGAGTGAGAGAGCAACAAGAGGGAAGTGAAGTGACGGCAGAAAAGATTT
                      ____________________________________________________________
consensus             TGGAGTAGAAGCGAGTGAGAGAGCAACAAGAGGGAAGTGAAGTGACGGCAGAAAAGATTT
 
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JMSF020B19+           GGCGCGGAGGAGGTGGACGAGGGACCCAGGGAAGAAGAAATCAATCATGGAGGGTTCAGA
JMFS143D09+           GGCGCGGAGGAGGTGGAAGAGGGACCCAGGGAAGAAGAAATCAATCATGGAGGGTTCAGA
                      ____________________________________________________________
consensus             GGCGCGGAGGAGGTGGACGAGGGACCCAGGGAAGAAGAAATCAATCATGGAGGGTTCAGA
 
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JMSF020B19+           TTTGATGGAGAGAGGCGAGGCC                                      
JMFS143D09+           TTTGATGGAGAGAGGCGAGGCCACGGTACAAAGTGGAAGGTAGATGTCCATTGATCGATG
                      ____________________________________________________________
consensus             TTTGATGGAGAGAGGCGAGGCCACGGTACAAAGTGGAAGGTAGATGTCCATTGATCGATG
 
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JMFS143D09+           CAACACCGCAACCGTCACCCTCAGCGCCCAACAGCCCTAGCAGTGGCAGTATTAGGTGGC
                      ____________________________________________________________
consensus             CAACACCGCAACCGTCACCCTCAGCGCCCAACAGCCCTAGCAGTGGCAGTATTAGGTGGC
 
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JMFS143D09+           GCAAACTCATAGTCTCGTGATCGGTGATGCAGGTGGACGTTGGCCTACACCTACAGTCTA
                      ____________________________________________________________
consensus             GCAAACTCATAGTCTCGTGATCGGTGATGCAGGTGGACGTTGGCCTACACCTACAGTCTA