Contig 010503:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS001H04Sequence599010503 (4)
JMFS051D10Sequence577010503 (4)
JMFS129F10Sequence625010503 (4)ref|XP_009761157.1|2e-04PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X3 [Nicoti
JMSF027P07Sequence631010503 (4)ref|XP_009761155.1|4e-28PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Nicoti686021482ref|XP_010312787.1|1e-103PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X3 [Solanu

Alignment

This contig is upended


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JMSF027P07+                                                         GAAACTGACGACGA
                      ____________________________________________________________
consensus                                                           GAAACTGACGACGA
 
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JMSF027P07+           TCTTATCAGGCCCGTGGATCTNATAGTAAGACAAAACTCCGTCTTGCAATACAAACCACN
                      ____________________________________________________________
consensus             TCTTATCAGGCCCGTGGATCTNATAGTAAGACAAAACTCCGTCTTGCAATACAAACCACN
 
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JMSF027P07+           TCGGCCTCCATCCCTNGCCGTAGTTCACCCACTTGTACAGAACTCCCGAAATGCCATTAC
JMFS001H04+                                                          GAAATGCCATTAC
JMFS129F10+                                              TACAGAACTCCCGAAATGCCATTAC
                      ____________________________________________________________
consensus             TCGGCCTCCATCCCTNGCCGTAGTTCACCCACTTGTACAGAACTCCCGAAATGCCATTAC
 
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JMSF027P07+           CGACTATCTCGTTGATCTTCACTTGNTGCTCTCTCTGGTGTTGCTGGCTATCCACTCCGC
JMFS051D10+                   TCGTTGATCTTCACTTGCTGCTCTCTCTGGTGTTGCTGGCTATCCACTCCGC
JMFS001H04+           CGACTATCTCGTTGATCTTCACTTGCTGCTCTCTCTGGTGTTGCTGGCTATCCACTCCGC
JMFS129F10+           CGACTATCTCGTTGATCTTCACTTGCTGCTCTCTCTGGTGTTGCTGGCTATCCACTCCGC
                      ____________________________________________________________
consensus             CGACTATCTCGTTGATCTTCACTTGCTGCTCTCTCTGGTGTTGCTGGCTATCCACTCCGC
 
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JMSF027P07+           CGAACGTCAGCTGCGTCGCCTCCCTCATCGACGGCGGCCGCGACATGGACAACACCTTCC
JMFS051D10+           CGAACGTCAGCTGCGTCGCCTCCCTCATCGACGGCGGCCGCGACATGGACAACACCTTCC
JMFS001H04+           CGAACGTCAGCTGCGTCGCCTCCCTCATCGACGGCGGCCGCGACATGGACAACACCTTCC
JMFS129F10+           CGAACGTCAGCTGCGTCGCCTCCCTCATCGACGGCGGCCGCGACATGGACAACACCTTCC
                      ____________________________________________________________
consensus             CGAACGTCAGCTGCGTCGCCTCCCTCATCGACGGCGGCCGCGACATGGACAACACCTTCC
 
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JMSF027P07+           CCGAAGCCGACGACGACGACTCGGTCAAATTCCGAGTATTAGAACTGGAATTGTTGTGAT
JMFS051D10+           CCGAAGCCGACGACGACGACTCGGTCAAATTCCGAGTATTAGAACTGGAATTGTTGTGAT
JMFS001H04+           CCGAAGCCGACGACGACGACTCGGTCAAATTCCGAGTATTAGAACTGGAATTGTTGTGAT
JMFS129F10+           CCGAAGCCGACGACGACGACTCGGTCAAATTCCGAGTATTAGAACTGGAATTGTTGTGAT
                      ____________________________________________________________
consensus             CCGAAGCCGACGACGACGACTCGGTCAAATTCCGAGTATTAGAACTGGAATTGTTGTGAT
 
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JMSF027P07+           GATAGTGATTTTGANTGCTGGAGACTGTCCACGAATCGGAGGATCTGGAGGCAGCGGACG
JMFS051D10+           GATAGTGATTTTGACTGCTGGAGACTGTCCACGAATCGGAGGATCTGGAGGCAGCGGACG
JMFS001H04+           GATAGTGATTTTGACTGCTGGAGACTGTCCACGAATCGGAGGATCTGGAGGCAGCGGACG
JMFS129F10+           GATAGTGATTTTGACTGCTGGAGACTGTCCACGAATCGGAGGATCTGGAGGCAGCGGACG
                      ____________________________________________________________
consensus             GATAGTGATTTTGACTGCTGGAGACTGTCCACGAATCGGAGGATCTGGAGGCAGCGGACG
 
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JMSF027P07+           ACGCCGGAGGCGGCAGGGGCGGCGGAGACATGGACAACAGCGAGGAATCACGGTGGTTAC
JMFS051D10+           ACGCCGGAGGCGGCAGGGGCGGCGGAGACATGGACAACAGCGAGGAATCACGGTGGTTAC
JMFS001H04+           ACGCCGGAGGCGGCAGGGGCGGCGGAGACATGGACAACAGCGAGGAATCACGGTGGTTAC
JMFS129F10+           ACGCCGGAGGCGGCAGGGGCGGCGGAGACATGGACAACAGCGAGGAATCACGGTGGTTAC
                      ____________________________________________________________
consensus             ACGCCGGAGGCGGCAGGGGCGGCGGAGACATGGACAACAGCGAGGAATCACGGTGGTTAC
 
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JMSF027P07+           TGTTAACGGTGGAAACGCAGCAGAACGGATGCATAGCGTAGCATAACAAAAATCAAATAT
JMFS051D10+           TGTTAACGGTGGAAACGCAGCAGAACGGATGCATAGCGTAGCATAACAAAAATCAAATAT
JMFS001H04+           TGTTAACGGTGGAAACGCAGCAGAACGGATGCATAGCGTAGCATAACAAAAATCAAATAT
JMFS129F10+           TGTTAACGGTGGAAACGCAGCAGAACGGATGCATAGCGTAGCATAACAAAAATCAAATAT
                      ____________________________________________________________
consensus             TGTTAACGGTGGAAACGCAGCAGAACGGATGCATAGCGTAGCATAACAAAAATCAAATAT
 
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JMSF027P07+           TCGACGGAAACTTTATGCTCCGGCGAGAATATTCTCATTCTCGTGGAATTATACTCCGCG
JMFS051D10+           TCGACGGAAACTTTATGCTCCGGCGAGAATATTCTCATTCTCGTGGAATTATACTCCGCG
JMFS001H04+           TCGACGGAAACTTTATGCTCCGGCGAGAATATTCTCATTCTCGTGGAATTATACTCCGCG
JMFS129F10+           TCGACGGAAACTTTATGCTCCGGCGAGAATATTCTCATTCTCGTGGAATTATACTCCGCG
                      ____________________________________________________________
consensus             TCGACGGAAACTTTATGCTCCGGCGAGAATATTCTCATTCTCGTGGAATTATACTCCGCG
 
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JMSF027P07+           TTTTCATATTCCTTTCTTTGGGAAATCAAAGTACAATATACGAACAGATATAGATGAAGC
JMFS051D10+           TTTTCATATTCCTTTCTTTGGGAAATCAAAGTACAATATACGAACAGATATAGATGAAGC
JMFS001H04+           TTTTCATATTCCTTTCTTTGGGAAATCAAAGTACAATATACGAACAGATATAGATGAAGC
JMFS129F10+           TTTTCATATTCCTTTCTTTGGGAAATCAAAGTACAATATACGAACAGATATAGATGAAGC
                      ____________________________________________________________
consensus             TTTTCATATTCCTTTCTTTGGGAAATCAAAGTACAATATACGAACAGATATAGATGAAGC
 
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JMSF027P07+           GAGGCGTCAACAAACT                                            
JMFS051D10+           GAGGCGTCAACAAACTGGTGCCGGAGATCAAAACTGGAAAAGAAATTTCCAGCGATGTAT
JMFS001H04+           GAGGCGTCAACAAACTGGTGCCGGAGATCAAAACTGGAAAAGAAATTTCCAGCGATGTAT
JMFS129F10+           GAGGCGTCAACAAACTGGTGCCGGAGATCAAAACTGGAAAAGAAATTTCCAGCGATGTAT
                      ____________________________________________________________
consensus             GAGGCGTCAACAAACTGGTGCCGGAGATCAAAACTGGAAAAGAAATTTCCAGCGATGTAT
 
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JMFS051D10+           GGTGACGTGGCGGAGGAAAAGGAGAAAACGAGCACGGGAAGGAAA               
JMFS001H04+           GGTGACGTGGCGGAGGAAAAGGAGAAAACGAGCACGGGAAGGAAA               
JMFS129F10+           GGTGACGTGGCGGAGGAAAAGGAGAAAACGAGCACGGGAAGGAAAGACCCGGATATTTAG
                      ____________________________________________________________
consensus             GGTGACGTGGCGGAGGAAAAGGAGAAAACGAGCACGGGAAGGAAAGACCCGGATATTTAG