Contig 010492:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS112D03Sequence641010492 (3)ref|XP_009785532.1|4e-40PREDICTED: filament-like plant protein 4 [Nicotiana sylvestris] ref|XP_009785533
JMFS148C10Sequence608010492 (3)ref|XP_009785532.1|4e-36PREDICTED: filament-like plant protein 4 [Nicotiana sylvestris] ref|XP_009785533
JMFS148C12Sequence627010492 (3)ref|XP_009785532.1|3e-37PREDICTED: filament-like plant protein 4 [Nicotiana sylvestris] ref|XP_009785533

Alignment

This contig is upended


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JMFS148C12+                                             CTTCACCAGGTTCTCCTTATTAGTGA
JMFS148C10+                                                   CAGGTTCTCCTTATTAGTGA
JMFS112D03+                              AACTTTAGCGTGTGNCTTCACCAGGTTCTCCTTATTAGTGA
                      ____________________________________________________________
consensus                                AACTTTAGCGTGTGNCTTCACCAGGTTCTCCTTATTAGTGA
 
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JMFS148C12+           TTTCAGCTTCTGCTGCAGACAGCTTCTCGTTCAATTCCTTAACCTCCTCATCTAACGTCT
JMFS148C10+           TTTCAGCTTCTGCTGCAGACAGCTTCTCGTTCAATTCCTTAACCTCCTCATCTAACGTCT
JMFS112D03+           TTTCAGCTTCTGCTGCAGACAGCTTCTCGTTCAATTCCTTAACCTCCTCATCTAACGTCT
                      ____________________________________________________________
consensus             TTTCAGCTTCTGCTGCAGACAGCTTCTCGTTCAATTCCTTAACCTCCTCATCTAACGTCT
 
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JMFS148C12+           TAACCTGTTCTTCATAGGACTTCACCTCATCCTCCAATCCTGTCAGATGTGAATACGACT
JMFS148C10+           TAACCTGTTCTTCATAGGACTTCACCTCATCCTCCAATCCTGTCAGATGTGAATACGACT
JMFS112D03+           TAACCTGTTCTTCATAGGACTTCACCTCATCCTCCAATCCTGTCAGATGTGAATACGACT
                      ____________________________________________________________
consensus             TAACCTGTTCTTCATAGGACTTCACCTCATCCTCCAATCCTGTCAGATGTGAATACGACT
 
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JMFS148C12+           CCGCAGATATTTGCACATATTTTGGTTTCTTACAGTTATCCTGTTTTCCCTGATCACCCT
JMFS148C10+           CCGCAGATATTTGCACATATTTTGGTTTCTTACAGTTATCCTGTTTTCCCTGATCACCCT
JMFS112D03+           CCGCAGATATTTGCACATATTTTGGTTTCTTACAGTTATCCTGTTTTCCCTGATCACCCT
                      ____________________________________________________________
consensus             CCGCAGATATTTGCACATATTTTGGTTTCTTACAGTTATCCTGTTTTCCCTGATCACCCT
 
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JMFS148C12+           GGGATCCATGTGAATCTGTAGTCGCCGCAGCTGAGTCCAGTATAGCTACTGCAGCTTTTT
JMFS148C10+           GGGATCCATGTGAATCTGTAGTCGCCGCAGCTGAGTCCAGTATAGCTACTGCAGCTTTTT
JMFS112D03+           GGGATCCATGTGAATCTGTAGTCGCCGCAGCTGAGTCCAGTATAGCTACTGCAGCTTTTT
                      ____________________________________________________________
consensus             GGGATCCATGTGAATCTGTAGTCGCCGCAGCTGAGTCCAGTATAGCTACTGCAGCTTTTT
 
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JMFS148C12+           CAACTGATGCTTTATCAGAAGACTTCTTCTTCCAGGGCCAACTCCTCCGGTCCATTATAG
JMFS148C10+           CAACTGATGCTTTATCAGAAGACTTCTTCTTCCAGGGCCAACTCCTCCGGTCCATTATAG
JMFS112D03+           CAACTGATGCTTTATCAGAAGACTTCTTCTTCCAGGGCCAACTCCTCCGGTCCATTATAG
                      ____________________________________________________________
consensus             CAACTGATGCTTTATCAGAAGACTTCTTCTTCCAGGGCCAACTCCTCCGGTCCATTATAG
 
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JMFS148C12+           AGTATTACTGATGCAAGATCGTAACTATGTCACTCGGCGAGTCACGACTCGGTGCGCCTT
JMFS148C10+           AGTATTACTGATGCAAGATCGTAACTATGTCACTCGGCGAGTCACGACTCGGTGCGCCTT
JMFS112D03+           AGTATTACTGATGCAAGATCGTAACTATGTCACTCGGCGAGTCACGACTCGGTGCGCCTT
                      ____________________________________________________________
consensus             AGTATTACTGATGCAAGATCGTAACTATGTCACTCGGCGAGTCACGACTCGGTGCGCCTT
 
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JMFS148C12+           CTAGAACGACAAACACATTGCTCTGCTAGGAAGACAAGCACATTACACACACACATATAG
JMFS148C10+           CTAGAACGACAAACACATTGCTCTGCTAGGAAGACAAGCACATTACACACACACATATAG
JMFS112D03+           CTAGAACGACAAACACATTGCTCTGCTAGGAAGACAAGCACATTACACACACACATATAG
                      ____________________________________________________________
consensus             CTAGAACGACAAACACATTGCTCTGCTAGGAAGACAAGCACATTACACACACACATATAG
 
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JMFS148C12+           AGAGAGAGTGTGTATGTGCGCGCGCGTTAGCTCTGAGCTGACTGCTGAGATCTGTTTAGC
JMFS148C10+           AGAGAGAGTGTGTATGTGCGCGCGCGTTAGCTCTGAGCTGACTGCTGAGATCTGTTTAGC
JMFS112D03+           AGAGAGAGTGTGTATGTGCGCGCGCGTTAGCTCTGAGCTGACTGCTGAGATCTGTTTAGC
                      ____________________________________________________________
consensus             AGAGAGAGTGTGTATGTGCGCGCGCGTTAGCTCTGAGCTGACTGCTGAGATCTGTTTAGC
 
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JMFS148C12+           TTGTCTTTAACAACTCAGGTGTAGAGAGAGAAAGTGAATTTAGCGCATTCGTGTGAGCTT
JMFS148C10+           TTGTCTTTAACAACTCAGGTGTAGAGAGAGAAAGTGAATTTAGCGCATTCGTGTGAGCTT
JMFS112D03+           TTGTCTTTAACAACTCAGGTGTAGAGAGAGAAAGTGAATTTAGCGCATTCGTGTGAGCTT
                      ____________________________________________________________
consensus             TTGTCTTTAACAACTCAGGTGTAGAGAGAGAAAGTGAATTTAGCGCATTCGTGTGAGCTT
 
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JMFS148C12+           TTAGAGAGAGAGAGAGGCGGAGGAGGGAGGAGATGGTGGCGGTGGTGG            
JMFS148C10+           TTAGAGAGAGAGAGAGGCGGAGGAGGGAGGAGATGGTGGCGGTGGTGG            
JMFS112D03+           TTAGAGAGAGAGAGAGGCGGAGGAGGGAGGAGATGGTGGCGGTGGTGGTGGTGATACTAG
                      ____________________________________________________________
consensus             TTAGAGAGAGAGAGAGGCGGAGGAGGGAGGAGATGGTGGCGGTGGTGGTGGTGATACTAG