Contig 010436:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003B05Sequence577010436 (4)gb|KJB35014.1|2e-80hypothetical protein B456_006G095700, partial [Gossypium raimondii]
JMFS036B04Sequence541010436 (4)ref|XP_004235599.1|3e-98PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X2 [Solanum lycopersicum]
JMFS101A12Sequence622010436 (4)ref|XP_004235599.1|6e-110PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X2 [Solanum lycopersicum]
JMFS142B02Sequence621010436 (4)ref|XP_004235599.1|6e-110PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS142B02+                       GTCACGTATAACAAACAGTAGGGTAGTTTTACGGGGACTAAATAATCT
JMFS003B05+                                                                 TAATCT
JMFS101A12+                      TGTCACGTATAACAAACAGTAGGGTAGTTTTACGGGGACTAAATAATCT
JMFS036B04+                                                                      T
                      ____________________________________________________________
consensus                        TGTCACGTATAACAAACAGTAGGGTAGTTTTACGGGGACTAAATAATCT
 
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JMFS142B02+           CATCATGACCTGGAAAACAGTTTTCAATAGAGGCTTATNTGCTGCTTGCTCACGGCCAAT
JMFS003B05+           CATCATGACCTGGAAAACAGTTTTCAATAGAGGCTTATTTGCTGCTTGCTCACGGCCAAT
JMFS101A12+           CATCATGACCTGGAAAACAGTTTTCAATAGAGGCTTATNTGCTGCTTGCTCACGGCCAAT
JMFS036B04+           CATCATGACCTGGAAAACAGTTTTCAATAGAGGCTTATTTGCTGCTTGCTCACGGCCAAT
                      ____________________________________________________________
consensus             CATCATGACCTGGAAAACAGTTTTCAATAGAGGCTTATTTGCTGCTTGCTCACGGCCAAT
 
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JMFS142B02+           ATCATGACACCACATGTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACT
JMFS003B05+           ATCATGACACCACATGTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACT
JMFS101A12+           ATCATGACACCACATGTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACT
JMFS036B04+           ATCATGACACCACATGTTTATTAAAACTATATCAGAANCAGCAAGGGCAAACAAGGCACT
                      ____________________________________________________________
consensus             ATCATGACACCACATGTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACT
 
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JMFS142B02+           CTGCTTTTCAAATGCCGTATCATCCTCTCCTCTCTCTCTTCCATCGGTGCCCTCTAAATC
JMFS003B05+           CTGCTTTTCAAATGCCGTATCATCCTCTCCTCTCTCTCTTCCATCGGTGCCCTCTAAATC
JMFS101A12+           CTGCTTTTCAAATGCCGTATCATCCTCTCCTCTCTCTCTTCCATCGGTGCCCTCTAAATC
JMFS036B04+           CTGCTTTTCAAATGCCGTATCATCCTCTCCTCTCTCTCTTCCATCGGTGCCCTCTAAATC
                      ____________________________________________________________
consensus             CTGCTTTTCAAATGCCGTATCATCCTCTCCTCTCTCTCTTCCATCGGTGCCCTCTAAATC
 
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JMFS142B02+           CATTACAAGGGTGCAGGGTTCAATTCCAACACATCGAGCCATCCAAATACCTTTTGTGGT
JMFS003B05+           CATTACAAGGGTGCAGGGTTCAATTCCAACACATCGAGCCATCCAAATACCTTTTGTGGT
JMFS101A12+           CATTACAAGGGTGCAGGGTTCAATTCCAACACATCGAGCCATCCAAATACCTTTTGTGGT
JMFS036B04+           CATTACAAGGGTGCAGGGTTCAATTCCAACACATCGAGCCATCCAAATACCTTTTGTGGT
                      ____________________________________________________________
consensus             CATTACAAGGGTGCAGGGTTCAATTCCAACACATCGAGCCATCCAAATACCTTTTGTGGT
 
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JMFS142B02+           TTGTGACCTTCCTTTAAAAGCATCCATCTCTCTAAAGTTTGTATGGAATAGATGATTCAA
JMFS003B05+           TTGTGACCTTCCTTTAAAAGCATCCATCTCTCTAAAGTTTGTATGGAATAGATGATTCAA
JMFS101A12+           TTGTGACCTTCCTTTAAAAGCATCCATCTCTCTAAAGTTTGTATGGAATAGATGATTCAA
JMFS036B04+           TTGTGACCTTCCTTTAAAAGCATCCATCTCTCTAAAGTTTGTATGGAATAGATGATTCAA
                      ____________________________________________________________
consensus             TTGTGACCTTCCTTTAAAAGCATCCATCTCTCTAAAGTTTGTATGGAATAGATGATTCAA
 
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JMFS142B02+           CAGTGTGCTCTTTCCGCTACTTTGTGGGCCCATAATTGATACAACAGCATATGAAAGCCC
JMFS003B05+           CAGTGTGCTCTTTCCGCTACTTTGTGGGCCCATAATTGATACAACAGCATATGAAAGCCC
JMFS101A12+           CAGTGTGCTCTTTCCGCTACTTTGTGGGCCCATAATTGATACAACAGCATATGAAAGCCC
JMFS036B04+           CAGTGTGCTCTTTCCGCTACTTTGTGGGCCCATAATTGATACAACAGCATATGAAAGCCC
                      ____________________________________________________________
consensus             CAGTGTGCTCTTTCCGCTACTTTGTGGGCCCATAATTGATACAACAGCATATGAAAGCCC
 
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JMFS142B02+           ACATTCTGCCAGTTTAACCTCCTTCATGAAATTTTCAATTCCAGTAACATTGAATACACC
JMFS003B05+           ACATTCTG--AGTTTAACCTCCTTCATGAAATTTTCAATTCCAGTAACATTGAATACACC
JMFS101A12+           ACATTCTGCCAGTTTAACCTCCTTCATGAAATTTTCAATTCCAGTAACATTGAATACACC
JMFS036B04+           ACATTCTGCCAGTTTAACCTCCTTCATGAAATTTTCAATTCCAGTAACATTGAATACACC
                      ____________________________________________________________
consensus             ACATTCTGCCAGTTTAACCTCCTTCATGAAATTTTCAATTCCAGTAACATTGAATACACC
 
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JMFS142B02+           ATCCCCATCAAGGAGTTGAGTTGAACAACACACGTCGGTTTTTTCCATTCTGAAAGACGA
JMFS003B05+           ATCCCCATCAAGGAGTTGAGTTG                                     
JMFS101A12+           ATCCCCATCAAGGAGTTGAGTTGAACAACACACGTCGGTTTTTTCCATTCTGAAAGACGA
JMFS036B04+           ATCCCCATCAAGGAGTTGAGTTGAACAACACACGTCGGTTTTTTCCATTCTGAAAGACGA
                      ____________________________________________________________
consensus             ATCCCCATCAAGGAGTTGAGTTGAACAACACACGTCGGTTTTTTCCATTCTGAAAGACGA
 
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JMFS142B02+           AGCACGATCGAGATTCAGGGAGGGCGAAGACGATTAGTCCGCTGAGTT            
JMFS101A12+           AGCACGATCGAGATTCAGGGAGGGCGAAGACGATTAGTCCGCTGAGTT            
JMFS036B04+           AGCACGATCGAGATTCAGGGAGGGCGAAGACGATTAGTCCGCTGAGTTTGGACCGGGTTG
                      ____________________________________________________________
consensus             AGCACGATCGAGATTCAGGGAGGGCGAAGACGATTAGTCCGCTGAGTTTGGACCGGGTTG