Contig 010434:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS017A12Sequence617010434 (5)ref|XP_009628286.1|4e-123PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic [Nicotiana to
JMFS035B07Sequence570010434 (5)gb|AIR07819.1|4e-120glutamate synthase Fd-GOGAT, partial [Vitis labrusca x Vitis vinifera]
JMFS091A09Sequence613010434 (5)ref|XP_002267056.1|4e-123PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic [Vitis vinife
JMFS096G03Sequence617010434 (5)gb|AIR07819.1|6e-125glutamate synthase Fd-GOGAT, partial [Vitis labrusca x Vitis vinifera]
JMFS114G03Sequence517010434 (5)gb|AAP33664.1|7e-110ferredoxin-dependent glutamate synthase [Securigera parviflora]

Alignment

This contig is upended


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JMFS114G03+                                                         AGTCTTTTCGCGGT
                      ____________________________________________________________
consensus                                                           AGTCTTTTCGCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114G03+           ATCTTCGGAGAAAGCCTTAACCCAGAATGACAAAGTCTCCCTTGCCAGCTCATCCAGAGT
                      ____________________________________________________________
consensus             ATCTTCGGAGAAAGCCTTAACCCAGAATGACAAAGTCTCCCTTGCCAGCTCATCCAGAGT
 
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JMFS114G03+           TAAGCCACCAATACTTGATTTACTCCCACAAAATGAAATATCAACAACCTCCTTTCCCAA
                      ____________________________________________________________
consensus             TAAGCCACCAATACTTGATTTACTCCCACAAAATGAAATATCAACAACCTCCTTTCCCAA
 
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JMFS114G03+           TCCATATATTTCAAATATCTGTGCTCCACAATAACTTGAGAGCAGTGAAATTCCCATTTT
                      ____________________________________________________________
consensus             TCCATATATTTCAAATATCTGTGCTCCACAATAACTTGAGAGCAGTGAAATTCCCATTTT
 
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JMFS114G03+           GGAAAGAATTTTGAGAAGGCCAGATTTTATTGCCTTACAGAAGTTCTTTTGAGCTTGCTC
JMFS091A09+                                                            TGAGCTTGCTC
                      ____________________________________________________________
consensus             GGAAAGAATTTTGAGAAGGCCAGATTTTATTGCCTTACAGAAGTTCTTTTGAGCTTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114G03+           AATAGTAACAGTAGGCATCTTTCCATTACGCATCAGGTTCACAGTTTTATTGCTCAAGCG
JMFS091A09+           AATAGTAACAGTAGGCATCTTTCCATTACGCATCAGGTTCACAGTTTTATTGCTCAAGCG
                      ____________________________________________________________
consensus             AATAGTAACAGTAGGCATCTTTCCATTACGCATCAGGTTCACAGTTTTATTGCTCAAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114G03+           CCACTGACGACATGTCTCCAATGCCAAGTATGGGCAAATAGCACTTGCACCATATCCTAT
JMFS091A09+           CCACTGACGACATGTCTCCAATGCCAAGTATGGGCAAATAGCACTTGCACCATATCCTAT
                      ____________________________________________________________
consensus             CCACTGACGACATGTCTCCAATGCCAAGTATGGGCAAATAGCACTTGCACCATATCCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114G03+           CAAGCAAGCAAACTGATGAGTGCTGAAGCACTGAGCAGTATCAGCAACAATCGAAGCAGA
JMFS091A09+           CAAGCAAGCAAACTGATGAGTGCTGAAGCACTGAGCAGTATCAGCAACAATCGAAGCAGA
                      ____________________________________________________________
consensus             CAAGCAAGCAAACTGATGAGTGCTGAAGCACTGAGCAGTATCAGCAACAATCGAAGCAGA
 
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JMFS114G03+           CATACGCAGACCATTCTGAATCAGGTGCTGGTGAACTGCACCTACAGCAAGAAGTATTGG
JMFS091A09+           CATACGCAGACCATTCTGAATCAGGTGCTGGTGAACTGCACCTACAGCAAGAAGTATTGG
                      ____________________________________________________________
consensus             CATACGCAGACCATTCTGAATCAGGTGCTGGTGAACTGCACCTACAGCAAGAAGTATTGG
 
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JMFS114G03+           AATCGCAGGCCGTGTAGCTTCCA                                     
JMFS091A09+           AATCGCAGGCCGTGTAGCTTCCAGCTCATCAGCCCTGTCAGAGAGAACAAGCAATTGAGA
                      ____________________________________________________________
consensus             AATCGCAGGCCGTGTAGCTTCCAGCTCATCAGCCCTGTCAGAGAGAACAAGCAATTGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091A09+           ACCATTTCTAACAGCTTCATCAGCTGCTTCACAAAGTTTGTGCAGTGCCTTTTCCAAGGA
                      ____________________________________________________________
consensus             ACCATTTCTAACAGCTTCATCAGCTGCTTCACAAAGTTTGTGCAGTGCCTTTTCCAAGGA
 
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JMFS091A09+           ACCATCCACTCCTTTTCCAACATCAAAAAATGTAGGTAATACTTGAGGTTTCAAATGTGG
                      ____________________________________________________________
consensus             ACCATCCACTCCTTTTCCAACATCAAAAAATGTAGGTAATACTTGAGGTTTCAAATGTGG
 
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JMFS091A09+           ATCTTTCAAAAGAGATTCTAACTCTCCTTCATTAAGCACTGGACTTGACAAATTAACCTG
JMFS017A12+                                                      CTTGACAAATTAACCTG
                      ____________________________________________________________
consensus             ATCTTTCAAAAGAGATTCTAACTCTCCTTCATTAAGCACTGGACTTGACAAATTAACCTG
 
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JMFS091A09+           AGAGACATTTTCAGGTCCAACCTCTAGTATATTTCCTCGCTTCCCAAGATTGACTTCAAG
JMFS017A12+           AGAGACATTTCAGGGTCCAACCTCTAGTATATTTCCTCGCTTCCCAAGATTGACTTCAAG
                      ____________________________________________________________
consensus             AGAGACATTTTCGGGTCCAACCTCTAGTATATTTCCTCGCTTCCCAAGATTGACTTCAAG
 
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JMFS091A09+           AGACATAACCAGTCCTTCTCTGAGAGGATCAATAGCAGGATTTATGACCTGAGCAAACCT
JMFS017A12+           AGACATAACCAGTCCTTCTCTGAGAGGATCAATAGCAGGATTTGTGACCTGAGCAAACCT
                      ____________________________________________________________
consensus             AGACATAACCAGTCCTTCTCTGAGAGGATCAATAGCAGGATTTGTGACCTGAGCAAACCT
 
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JMFS091A09+           CT                                                          
JMFS017A12+           CTGCTTGAAATAGTCAAATAGCATATGAGGCTTTGAAGATAATACAGCCAAAGGTATATC
                      ____________________________________________________________
consensus             CTGCTTGAAATAGTCAAATAGCATATGAGGCTTTGAAGATAATACAGCCAAAGGTATATC
 
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JMFS017A12+           ATCTCCCATGCAAAACGTAGGCTCCTTCCCCTGTGCAGCCATACTTTCAATAACCATTTG
JMFS096G03+                          CGTAGGCTCCTTCCCCTGTGCAGCCATACTTTCAATAACCATTTG
                      ____________________________________________________________
consensus             ATCTCCCATGCAAAACGTAGGCTCCTTCCCCTGTGCAGCCATACTTTCAATAACCATTTG
 
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JMFS017A12+           AACATCCTCACTAGAATAGCCATATGCCTGCTGGCGTCTCAAAATTGTTTCACTTTCCAA
JMFS096G03+           AACATCCTCACTAGAATAGCCATATGCCTGCTGGCGTCTCAAAATTGTTTCACTTTCCAA
                      ____________________________________________________________
consensus             AACATCCTCACTAGAATAGCCATATGCCTGCTGGCGTCTCAAAATTGTTTCACTTTCCAA
 
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JMFS017A12+           AACCATAGTTGAAAGGAAGTTCGCTGGCTTCAAAGCTCGTAAATTTTCCTTGACCCACTT
JMFS096G03+           AACCATAGTTGAAAGGAAGTTCGCTGGCTTCAAAGCTCGTAAATTTTCCTTGACCCACTT
JMFS035B07+                                             GCTCGTAAATTTTCCTTAACCCACTT
                      ____________________________________________________________
consensus             AACCATAGTTGAAAGGAAGTTCGCTGGCTTCAAAGCTCGTAAATTTTCCTTGACCCACTT
 
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JMFS017A12+           TCCATAAGGATTTGATAAAGCAACTCGCTTTTTGACCTCTGTGTTTTCAAAAACCTGACC
JMFS096G03+           TCCATAAGGATTTGATAAAGCAACTCGCTTTTTGACCTCTGTGTTTTCAAAAACCTGACC
JMFS035B07+           TCCATAAGGATTTGATAAAGCAACTCGCTTTTTGACCTCTGTGTTTTCAAAAACCTGACC
                      ____________________________________________________________
consensus             TCCATAAGGATTTGATAAAGCAACTCGCTTTTTGACCTCTGTGTTTTCAAAAACCTGACC
 
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JMFS017A12+           ACTTGTAAGATCAGCAGTTATCATCATTCCAGGACCTAGACGCCCTTTCATTGTTACCTT
JMFS096G03+           ACTTGTAAGATCAGCAGTTATCATCATTCCAGGACCTAGACGCCCTTACATTGTTACCTT
JMFS035B07+           ACTTGTAAGATCAGCAGTTATCATCATTCCAGGACCTAGACGCCCTTTCATTGTTACCTT
                      ____________________________________________________________
consensus             ACTTGTAAGATCAGCAGTTATCATCATTCCAGGACCTAGACGCCCTTTCATTGTTACCTT
 
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JMFS017A12+           TGATTCATCCATTGGCAAAACACCGACCTCAGATGCAACATAGACAACATTGTCTATTGT
JMFS096G03+           TGATTCATCCATTGGCAAAACACCGACCTCAGATGCAACATAGACAACATTGTCTATTGT
JMFS035B07+           TGATTCATCCATTGGCAAAACACCGACCTCAGATGCAACATAGACAACATTGTCTATTGT
                      ____________________________________________________________
consensus             TGATTCATCCATTGGCAAAACACCGACCTCAGATGCAACATAGACAACATTGTCTATTGT
 
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JMFS017A12+           CCTCCAATATCTAGCAGGGCGAAGTCCATTACGATCAAGACAAGCTCCGACTGTTTTTCC
JMFS096G03+           CCTCCAATATCTAGCAGGGCGAAGTCCATTACGATCAAGACAAGCTCCGACTGTTTTTCC
JMFS035B07+           CCTCCAATATCTAGCAGGGCGAAGTCCATTACGATCAAGACAAGCTCCGACTGTTTTTCC
                      ____________________________________________________________
consensus             CCTCCAATATCTAGCAGGGCGAAGTCCATTACGATCAAGACAAGCTCCGACTGTTTTTCC
 
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JMFS096G03+           ATCACTGAATAAGAGTAAGGCAGGCCCATCCCAAGCTTCCATTTGACCTTTGTAGTAATC
JMFS035B07+           ATCACTGAATAAGAGTAAGGCAGGCCCATCCCAAGCTTCCATTTGACCTTTGTAGTAATC
                      ____________________________________________________________
consensus             ATCACTGAATAAGAGTAAGGCAGGCCCATCCCAAGCTTCCATTTGACCTTTGTAGTAATC
 
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JMFS096G03+           ATAAAAACTAACCACCTCAGGATATTTGATAGTCAAAGTTGGATGATTTTGGTATGCCTC
JMFS035B07+           ATAAAAACTAACCACCTCAGGATATTTGATAGTCAAAGTTGGATGATTTTGGTATGCCTC
                      ____________________________________________________________
consensus             ATAAAAACTAACCACCTCAGGATATTTGATAGTCAAAGTTGGATGATTTTGGTATGCCTC
 
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JMFS096G03+           GGGAACAAGAATCATCAGAGCTTCATCAGGATTGCGCCCACTCCTTATTAGCAATTCTGC
JMFS035B07+           GGGAACAAGAATCATCAGAGCTTCATCAGGATTGCGCCCACTCCTTATTAGCAATTCTGC
                      ____________________________________________________________
consensus             GGGAACAAGAATCATCAGAGCTTCATCAGGATTGCGCCCACTCCTTATTAGCAATTCTGC
 
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JMFS096G03+           TGCACTGTCAAGATTAGCAGAGTCAGATGCTT                            
JMFS035B07+           TGCACTGTCAAGATTAGCAGAGTCAGATGCTTTTGAGTTCCCAAAAGGACGAATGTCATT
                      ____________________________________________________________
consensus             TGCACTGTCAAGATTAGCAGAGTCAGATGCTTTTGAGTTCCCAAAAGGACGAATGTCATT
 
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JMFS035B07+           TTCGCGTCCACGCCAAACAGGAGACTTCAAATAGGTCTCTCTAGATTGCATCCAGTTCAA
                      ____________________________________________________________
consensus             TTCGCGTCCACGCCAAACAGGAGACTTCAAATAGGTCTCTCTAGATTGCATCCAGTTCAA