Contig 010398:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN016E12Sequence618010398 (2)ref|XP_002284107.1|1e-101PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Vitis vinifera] r
JMFN043I10Sequence619010398 (2)ref|XP_002284107.1|8e-100PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Vitis vinifera] r

Alignment

This contig is upended


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JMFN016E12+                                                    CGCTTTAGCCCATAGTATC
JMFN043I10+                                                    CGCTTTAGCCCATAGTATC
                      ____________________________________________________________
consensus                                                      CGCTTTAGCCCATAGTATC
 
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JMFN016E12+           TGGCCACTGGATCAGTCACCTGAATACGAGGGAGCTGTGTTTCTTTGACAGTATATCTCT
JMFN043I10+           TGGCCACTGGATCAGTCACCTGAATACGAGGGAGCTGTGTTTCTTTGACAGTATATCTCT
                      ____________________________________________________________
consensus             TGGCCACTGGATCAGTCACCTGAATACGAGGGAGCTGTGTTTCTTTGACAGTATATCTCT
 
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JMFN016E12+           CCAGCAAGGTCTTCTTTTCCTCTGGAGTGAGCAGCTGGTGCTCAGGAACAAGTTCATGTT
JMFN043I10+           CCAGCAAGGTCTTCTTNTCCTCTGGAGTGAGCAGCTGGTGCTCAGGAACAAGTTCATGTT
                      ____________________________________________________________
consensus             CCAGCAAGGTCTTCTTTTCCTCTGGAGTGAGCAGCTGGTGCTCAGGAACAAGTTCATGTT
 
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JMFN016E12+           CTTTTATGTTGACTAACAACTCTGCCTCCTGGAAAACCTCCAAGTGGAACTTTGTAGATA
JMFN043I10+           CTTTTATGTTGACTAACAACTCTGCCTCCTGGAAAACCTCCAAGTGGAACTTTGTAGATA
                      ____________________________________________________________
consensus             CTTTTATGTTGACTAACAACTCTGCCTCCTGGAAAACCTCCAAGTGGAACTTTGTAGATA
 
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JMFN016E12+           TTTCACTTATGCATGTTCGAGCAAAGGGAGTTAAATTCTGTTGGACAACTAATATTGCCC
JMFN043I10+           TTTCACTTATGCATGTTCGAGCAAAGGGAGTTAAATTCTGTTGGACAACTAATATTGCCC
                      ____________________________________________________________
consensus             TTTCACTTATGCATGTTCGAGCAAAGGGAGTTAAATTCTGTTGGACAACTAATATTGCCC
 
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JMFN016E12+           GAAAAACATTCTCTGATTTCATGCGATTTGTGTAAGTTTTCATTGTCTTAACACCAACCT
JMFN043I10+           GAAAAACATTCTCTGATTTCATGCGATTTGTGTAAGTTTTCATTGTCTTAACACCAACCT
                      ____________________________________________________________
consensus             GAAAAACATTCTCTGATTTCATGCGATTTGTGTAAGTTTTCATTGTCTTAACACCAACCT
 
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JMFN016E12+           TTGCCTCCTCAGGGAAGAAAACATATATCTGATCAGAATTATCACTGAGTAATGCCTTTT
JMFN043I10+           TTGCCTGGGTTCTGAAGAAAACATATATCTGATCAGAATTATCACTGCGTAATGCCTTTT
                      ____________________________________________________________
consensus             TTGCCTGGTTTGTGAAGAAAACATATATCTGATCAGAATTATCACTGCGTAATGCCTTTT
 
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JMFN016E12+           GAATTACAATGTCCTCTCTTTTCATGTTCTCCCCATATTTCGAAATGAACTGATGCTTTG
JMFN043I10+           GAATTACAATGTCCTCTCTTTTCATGTTCTCCCCATATTTCGAAATGAACTGATGCTTTG
                      ____________________________________________________________
consensus             GAATTACAATGTCCTCTCTTTTCATGTTCTCCCCATATTTCGAAATGAACTGATGCTTTG
 
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JMFN016E12+           GCATTCCTATCTCATAGTCTGTCACCATGTAGCCCCTGTCGGTCAGCATTTGCATCACTG
JMFN043I10+           GCATTCCTATCTCATAGTCTGTCACCATGTAGCCCCTGTCGGTCAGCATTTGCATCACTG
                      ____________________________________________________________
consensus             GCATTCCTATCTCATAGTCTGTCACCATGTAGCCCCTGTCGGTCAGCATTTGCATCACTG
 
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JMFN016E12+           TCTTTCGGATCCTGAATAATCTTGTAATCTCCTCTTCCGAAAGAGGCATTTTCACACCCG
JMFN043I10+           TCTTTCGGATCCTGAATAATCTTGTAATCTCCTCTTCCGAAAGAGGCATTTTCACACCCG
                      ____________________________________________________________
consensus             TCTTTCGGATCCTGAATAATCTTGTAATCTCCTCTTCCGAAAGAGGCATTTTCACACCCG
 
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JMFN016E12+           TAGAAAGCTAAAAGTAGCTGACGATGGTGACACGAAGCGGCGGCTCTTGCCTGCAGAGA 
JMFN043I10+           TAGAAAGCTAAAAGTAGCTGACGATGGTGACACGAAGCGGCGGCTCTTGCCTGCAGAGAT
                      ____________________________________________________________
consensus             TAGAAAGCTAAAAGTAGCTGACGATGGTGACACGAAGCGGCGGCTCTTGCCTGCAGAGAT