Contig 010391:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015D03Sequence571010391 (2)
JMFN040E23Sequence622010391 (2)ref|XP_007044801.1|3e-16Octicosapeptide/Phox/Bem1p family protein isoform 1 [Theobroma cacao] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
JMCP015D03+ AAATTtTTTaTACTAAATaaGCAtTTGAA
                      ____________________________________________________________
consensus AAATTATTTTTACTAAATTTGCAATTGAA
 
. : . : . : . : . : . :
JMCP015D03+ ATAATTTAGGATGacACaATGGGGCCCCATaaCCTggtgATCCTAACCAACATGGAACCT
                      ____________________________________________________________
consensus ATAATTTAGGATGTGACTATGGGGCCCCATTTCCTCCACATCCTAACCAACATGGAACCT
 
. : . : . : . : . : . :
JMCP015D03+ CTTTTCTTTTCCAATTTCCAGGTATTTTCTCTCCTTTTATAATTGTTTTTTAAATTATAT
JMFN040E23+ TTTTTAAATTATAT
                      ____________________________________________________________
consensus CTTTTCTTTTCCAATTTCCAGGTATTTTCTCTCCTTTTATAATTGTTTTTTAAATTATAT
 
. : . : . : . : . : . :
JMCP015D03+ TTTGACTAAATTTGCAATTGAAATAATTTGTCCCTTCAAGCACTAGCTGTCATGGTCCCA
JMFN040E23+ TNTGACTAAATTTGCAATTGAAATAATTTGTCCCTTCAAGCACTAGCTGTCATGGTCCCA
                      ____________________________________________________________
consensus TTTGACTAAATTTGCAATTGAAATAATTTGTCCCTTCAAGCACTAGCTGTCATGGTCCCA
 
. : . : . : . : . : . :
JMCP015D03+ TAAGCTCAAATAAAGGGatATATATAAGGGGGGGAAAAGCTCCATTTTTCATATTCCTGT
JMFN040E23+ TAAGCTCAAATAAAGGGTAATATATAAGGGGGGGAAAAGCTCCATTTTTCATATTCCTGT
                      ____________________________________________________________
consensus TAAGCTCAAATAAAGGGTAATATATAAGGGGGGGAAAAGCTCCATTTTTCATATTCCTGT
 
. : . : . : . : . : . :
JMCP015D03+ AACGGCCACGTCCAATAATTCCAATTAGCTCTCTGGCATTACATTACAGCagaTCTTCCC
JMFN040E23+ AACGGCCACGTCCAATAATTCCAATTAGCTCTCTGGCATTACATTACAGCTCTTCTTCCC
                      ____________________________________________________________
consensus AACGGCCACGTCCAATAATTCCAATTAGCTCTCTGGCATTACATTACAGCTCTTCTTCCC
 
. : . : . : . : . : . :
JMCP015D03+ TCgTcTAGTTGTAGTTGTAGTTGTAGTTGATAGAACCAGGGCATCAAATGAACACCACTA
JMFN040E23+ TCCTGTAGTTGTAGTTGTAGTTGTAGTTGATAGAACCAGGGCATCAAATGAACACCACTA
                      ____________________________________________________________
consensus TCCTGTAGTTGTAGTTGTAGTTGTAGTTGATAGAACCAGGGCATCAAATGAACACCACTA
 
. : . : . : . : . : . :
JMCP015D03+ TCACTTTAGCATCCTCCTGTATCGTGAAGAGCTTGACATAATACTGATTTTCATTGTTGT
JMFN040E23+ TCACTTTAGCATCCTCCTGTATCGTGAAGAGCTTGACATAATACTGATTTTCATTGTTGT
                      ____________________________________________________________
consensus TCACTTTAGCATCCTCCTGTATCGTGAAGAGCTTGACATAATACTGATTTTCATTGTTGT
 
. : . : . : . : . : . :
JMCP015D03+ ACGTACCAAAGTGAACGTCAAAACTTTCAAGTGGC
JMFN040E23+ ACGTACCAAAGTGAACGTCAAAACTTTCAAGTGGCGGCAAAAGAAATGGAGCGCTCGACG
                      ____________________________________________________________
consensus ACGTACCAAAGTGAACGTCAAAACTTTCAAGTGGCGGCAAAAGAAATGGAGCGCTCGACG
 
. : . : . : . : . : . :
JMFN040E23+ GAAAGTACACGGGTCTCGCCGCCATAGTAACGGAGCTTGCCGTCAGGATGGCGAGGGAGA
                      ____________________________________________________________
consensus GAAAGTACACGGGTCTCGCCGCCATAGTAACGGAGCTTGCCGTCAGGATGGCGAGGGAGA
 
. : . : . : . : . : . :
JMFN040E23+ ATCTTTCCGCCATAGCTACAGAGGAATTTGATGTTGGTGGGAGAAGGACCGACCATCGTT
                      ____________________________________________________________
consensus ATCTTTCCGCCATAGCTACAGAGGAATTTGATGTTGGTGGGAGAAGGACCGACCATCGTT
 
. : . : . : . : . : . :
JMFN040E23+ TACAGATTTTTTTGTAGAAACTGATCCGATTTCTAGAAGACACAAAAGAGAACTCAGAAA
                      ____________________________________________________________
consensus TACAGATTTTTTTGTAGAAACTGATCCGATTTCTAGAAGACACAAAAGAGAACTCAGAAA
 
. : . : . : . : . : . :
JMFN040E23+ GAAGAATTTGAAGAAGAAAAAGGCTCTGAAGTCTGAATATGCTTTTTCTTCAGTGGCTTC
                      ____________________________________________________________
consensus GAAGAATTTGAAGAAGAAAAAGGCTCTGAAGTCTGAATATGCTTTTTCTTCAGTGGCTTC