Contig 010390:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008H02Sequence559010390 (2)ref|XP_009589802.1|4e-48PREDICTED: putative DNA-binding protein ESCAROLA [Nicotiana tomentosiformis]
JMFN040D02Sequence603010390 (2)ref|XP_009589802.1|8e-81PREDICTED: putative DNA-binding protein ESCAROLA [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+                                  GAGAACTGAAATTAAGTAAATAAAAGACTGGAGCTTT
                      ____________________________________________________________
consensus                                    GAGAACTGAAATTAAGTAAATAAAAGACTGGAGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           ATGGCTTTGATGAATTTGTGGATCAGCCCGGAGGACTGGAGTGGAGTGATCTATGGTTTT
                      ____________________________________________________________
consensus             ATGGCTTTGATGAATTTGTGGATCAGCCCGGAGGACTGGAGTGGAGTGATCTATGGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           GATAAGTTCTTGGGTGGTGCCCAGGAATAGACCTCTGCAGGGTGTAAAGCACCATTGGTG
                      ____________________________________________________________
consensus             GATAAGTTCTTGGGTGGTGCCCAGGAATAGACCTCTGCAGGGTGTAAAGCACCATTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           AGGAGATTCTGTGGCAAGCCATAGATGTCTGAGACCTCAACATTTTGATGGGAGTGATGG
JMFN040D02+                                                                    TGG
                      ____________________________________________________________
consensus             AGGAGATTCTGTGGCAAGCCATAGATGTCTGAGACCTCAACATTTTGATGGGAGTGATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           TTGTTTTGGTACTGCTGATTGGCGGCAGAAACCACTTGATCATCGTGTAATGGCAGCCTG
JMFN040D02+           TTGTTTTGGTACTGCTGATGNGCGGCAGAAACCACTTGATCATCGTGTAATGGCAGCCTG
                      ____________________________________________________________
consensus             TTGTTTTGGTACTGCTGATTGGCGGCAGAAACCACTTGATCATCGTGTAATGGCAGCCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           TCGAAAGTGGCGTTCAAGAAAGTGGCGGCCATGATCACCACGGGCCCAGAGGCGATGAGT
JMFN040D02+           TCGAAAGTGGCGTTCAAGAAAGTGGCGGCCATGATCACCACGGGCCCAGAGGCGATGAGT
                      ____________________________________________________________
consensus             TCGAAAGTGGCGTTCAAGAAAGTGGCGGCCATGATCACCACGGGCCCAGAGGCGATGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           GCGCCGACGACGCAGCCTCCCACCACCTGCCCCTGAGCCCCGGCTAGGTAGATGGTCAGC
JMFN040D02+           GCGCCGACGACGCAGCCTCCCACCACCTGCCCCTGAGCCCCGGCTAGGTAGATGGTCAGC
                      ____________________________________________________________
consensus             GCGCCGACGACGCAGCCTCCCACCACCTGCCCCTGAGCCCCGGCTAGGTAGATGGTCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           CCCGTGACGCCTGGGGGTGCGGGCGGGGGGAGGATGGAGCCAAGCAGAGACAGGATCTCG
JMFN040D02+           CCCGTGACGCCTGGGGGTGCGGGCGGGGGGAGGATGGAGCCAAGCAGAGACAGGATCTCG
                      ____________________________________________________________
consensus             CCCGTGACGCCTGGGGGTGCGGGCGGGGGGAGGATGGAGCCAAGCAGAGACAGGATCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           AACCTCCCGTGGAGTGTCACAATGGCCCCCGAAGAGGCCGGTTGGCGGAGTGTCACGTTG
JMFN040D02+           AACCTCCCGTGGAGTGTCACAATGGCCCCCGAAGAGGCCGGTTGGCGGAGTGTCACGTTG
                      ____________________________________________________________
consensus             AACCTCCCGTGGAGTGTCACAATGGCCCCCGAAGAGGCCGGTTGGCGGAGTGTCACGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H02+           GTCACACACCCCGTGGCACTCAGCACGGAAATGCCCCTTTGC                  
JMFN040D02+           GTCACACACCCCGTGGCACTCAGCACGGAAATGCCCCTTTGCTTTCTCCTCGCAAAGTTC
                      ____________________________________________________________
consensus             GTCACACACCCCGTGGCACTCAGCACGGAAATGCCCCTTTGCTTTCTCCTCGCAAAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040D02+           ACTAGGCTTTCGTTCACATCGCACCCCGAGCTTACCTCCATCGCGTGCGCTTTCAGGGCA
                      ____________________________________________________________
consensus             ACTAGGCTTTCGTTCACATCGCACCCCGAGCTTACCTCCATCGCGTGCGCTTTCAGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040D02+           TTCGCGCTGTCCCTCGTAATGATGATTGGCGGTTTGGGCTTGTTCTTCGACCCTGCTGGC
                      ____________________________________________________________
consensus             TTCGCGCTGTCCCTCGTAATGATGATTGGCGGTTTGGGCTTGTTCTTCGACCCTGCTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040D02+           CGGCCCCGAGGCCTCCTTATCGCTTCTCCTACCGGCACTGCCTTGGGCAACTTGGCAGTA
                      ____________________________________________________________
consensus             CGGCCCCGAGGCCTCCTTATCGCTTCTCCTACCGGCACTGCCTTGGGCAACTTGGCAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040D02+           GCTACAAGTTCTTGGTTCTGATTCACCACCCTCTCAGCACCAGCCATTTTTTCCCCACTT
                      ____________________________________________________________
consensus             GCTACAAGTTCTTGGTTCTGATTCACCACCCTCTCAGCACCAGCCATTTTTTCCCCACTT