Contig 010349:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003H16Sequence611010349 (4)ref|XP_010546611.1|7e-79PREDICTED: 40S ribosomal protein S24-1 [Tarenaya hassleriana] ref|XP_010524907.1
JMFN004O23Sequence595010349 (4)ref|XP_010546611.1|1e-78PREDICTED: 40S ribosomal protein S24-1 [Tarenaya hassleriana] ref|XP_010524907.1
JMFN013F16Sequence467010349 (4)ref|XP_010546611.1|1e-50PREDICTED: 40S ribosomal protein S24-1 [Tarenaya hassleriana] ref|XP_010524907.1
JMFN038K04Sequence620010349 (4)ref|XP_010546611.1|2e-78PREDICTED: 40S ribosomal protein S24-1 [Tarenaya hassleriana] ref|XP_010524907.1

Alignment

This contig is upended


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JMFN004O23+                TTTTTAAGAAAGTAACAAAACATGCATGCTTCAGGGAGTATTTTCTTTGTTTGTT
                      ____________________________________________________________
consensus                  TTTTTAAGAAAGTAACAAAACATGCATGCTTCAGGGAGTATTTTCTTTGTTTGTT
 
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JMFN038K04+                                            AAATCTACTTCTTCTTTCCACCCTTAG
JMFN003H16+                                            AAATCTACTTCTTCTTTCCACCCTTAG
JMFN013F16+                                            AAATCTACTTCTTCTTTCCACCCTTAG
JMFN004O23+           GGGTTACAGAAATAGTGACACCTTCAACACTATAAATCTACTTCTTCTTTCCACCCTTAG
                      ____________________________________________________________
consensus             GGGTTACAGAAATAGTGACACCTTCAACACTATAAATCTACTTCTTCTTTCCACCCTTAG
 
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JMFN038K04+           CAGCATCTCCAGCTTTTGTCTTCTTAACACCACGAATCTTTTTAGTTCTGTTTTTGCGTT
JMFN003H16+           CAGCATCTCCAGCTTTTGTCTTCTTAACACCACGAATCTTTTTAGTTCTGTTTTTGCGTT
JMFN013F16+           CAGCATCTCCAGCTTTTGTCTTCTTAACACCACGAATCTTTTTAGTTCTGTTTTTGCGTT
JMFN004O23+           CAGCATCTCCAGCTTTTGTCTTCTTAACACCACGAATCTTTTTAGTTCTGTTTTTGCGTT
                      ____________________________________________________________
consensus             CAGCATCTCCAGCTTTTGTCTTCTTAACACCACGAATCTTTTTAGTTCTGTTTTTGCGTT
 
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JMFN038K04+           CTTTCATTTGTTTCCTAGACTTCTCCACCTTAGTATCCAACCCATTCCTAATGAGTCTAT
JMFN003H16+           CTTTCATTTGTTTCCTAGACTTCTCCACCTTAGTATCCAACCCATTCCTAATGAGTCTAT
JMFN013F16+           CTTTCATTTGTTTCCTAGACTTCTCCACCTTAGTATCCAACCCATTCCTAATGAGTCTAT
JMFN004O23+           CTTTCATTTGTTTCCTAGACTTCTCCACCTTAGTATCCAACCCATTCCTAATGAGTCTAT
                      ____________________________________________________________
consensus             CTTTCATTTGTTTCCTAGACTTCTCCACCTTAGTATCCAACCCATTCCTAATGAGTCTAT
 
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JMFN038K04+           ATTTGGGTTCAAATTTCTTTGCATTTTCAACTGAATCGTAGATCAAGCCGAACCCAGTAG
JMFN003H16+           ATTTGGGTTCAAATTTCTTTGCATTTTCAACTGAATCGTAGATCAAGCCGAACCCAGTAG
JMFN013F16+           ATTTGGGTTCAAATTTCTTTGCATTTTCAACTGAATCGTAGATCAAGCCGAACCCAGTAG
JMFN004O23+           ATTTGGGTTCAAATTTCTTTGCATTTTCAACTGAATCGTAGATCAAGCCGAACCCAGTAG
                      ____________________________________________________________
consensus             ATTTGGGTTCAAATTTCTTTGCATTTTCAACTGAATCGTAGATCAAGCCGAACCCAGTAG
 
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JMFN038K04+           ATTTTCCTCCTCCAAAATGAGTGCGGAACTTAAACACGAAAATGGAGTTGGGATCTCTCA
JMFN003H16+           ATTTTCCTCCTCCAAAATGAGTGCGGAACTTAAACACGAAAATGGAGTTGGGATCTCTCA
JMFN013F16+           ATTTTCCTCCTCCAAAATGAGTGCGGAACTTAAACACGAAAATGGAGTTGGGATCTCTCA
JMFN004O23+           ATTTTCCTCCTCCAAAATGAGTGCGGAACTTAAACACGAAAATGGAGTTGGGATCTCTCA
                      ____________________________________________________________
consensus             ATTTTCCTCCTCCAAAATGAGTGCGGAACTTAAACACGAAAATGGAGTTGGGATCTCTCA
 
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JMFN038K04+           CATCATACATCCTTGCCAATTTCTCCTTCAACTCAGCCTTTGAAACATTGGCCCTTCCTG
JMFN003H16+           CATCATACATCCTTGCCAATTTCTCCTTCAACTCAGCCTTTGAAACATTGGCCCTTCCTG
JMFN013F16+           CATCATACATCCTTGCCAATTTCTCCTTCAACTCAGCCTTT                   
JMFN004O23+           CATCATACATCCTTGCCAATTTCTCCTTCAACTCAGCCTTTGAAACATTGGCCCTTCCTG
                      ____________________________________________________________
consensus             CATCATACATCCTTGCCAATTTCTCCTTCAACTCAGCCTTTGAAACATTGGCCCTTCCTG
 
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JMFN038K04+           GGTGAAGAACATCAATGACAAATTGCTTCCTTGCGAGAAGGCGATTGGTCATAAACTTCC
JMFN003H16+           GGTGAAGAACATCAATGACAAATTGCTTCCTTGCGAGAAGGCGATTGGTCATAAACTTCC
JMFN004O23+           GGTGAAGAACATCAATGACAAATTGCTTCCTTGCGAGAAGGCGATTGGTCATAAACTTCC
                      ____________________________________________________________
consensus             GGTGAAGAACATCAATGACAAATTGCTTCCTTGCGAGAAGGCGATTGGTCATAAACTTCC
 
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JMFN038K04+           TTGTCCTGATGGTAACAGCCTTGTCCGCCAT                             
JMFN003H16+           TTGTCCTGATGGTAACAGCCTTGTCCGCCAT                             
JMFN004O23+           TTGTCCTGATGGTAACAGCCTTGTCCGCCATTTCTTCGTCTCTGCCGTCGTCCCTCTTCT
                      ____________________________________________________________
consensus             TTGTCCTGATGGTAACAGCCTTGTCCGCCATTTCTTCGTCTCTGCCGTCGTCCCTCTTCT
 
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JMFN004O23+           TCTGCTTCTCACTCTGTCGTCTCCTTCGCGAGGCTGAGCTCTCAAATTTGGCAGGACGAA
                      ____________________________________________________________
consensus             TCTGCTTCTCACTCTGTCGTCTCCTTCGCGAGGCTGAGCTCTCAAATTTGGCAGGACGAA