Contig 010340:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018F16Sequence540010340 (5)emb|CDP06673.1|8e-84unnamed protein product [Coffea canephora]776005429 (4)ref|WP_037052485.1|1e-08hypothetical protein [Pseudomonas oleovorans]
JMFF026D08Sequence539010340 (5)ref|XP_009593629.1|1e-80PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Nicotiana to788005429 (4)emb|CDM39172.1|1e-04hypothetical protein BN5_0560 [Pseudomonas pseudoalcaligenes CECT 5344] emb|CDR
JMFF028D16Sequence483010340 (5)emb|CDP06673.1|5e-67unnamed protein product [Coffea canephora]690005429 (4)ref|WP_037052485.1|1e-08hypothetical protein [Pseudomonas oleovorans]
JMFF050O07Sequence626010340 (5)ref|XP_009765001.1|2e-79PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X1 [Nicotia581005429 (4)ref|WP_017519164.1|2e-05hypothetical protein [Pseudomonas nitroreducens]
JMFF051M02Sequence583010340 (5)emb|CDP06673.1|3e-63unnamed protein product [Coffea canephora]214019197

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF050O07+ GCGGCTTGGGCTGTAACTTCGACTATGCCT
                      ____________________________________________________________
consensus GCGGCTTGGGCTGTAACTTCGACTATGCCT
 
. : . : . : . : . : . :
JMFF050O07+ CCGGCCACGGGGAGGAGAACGTGATCTCTCAGGTGTCCTTGAGAAACTCCTTCCACGTNT
                      ____________________________________________________________
consensus CCGGCCACGGGGAGGAGAACGTGATCTCTCAGGTGTCCTTGAGAAACTCCTTCCACGTNT
 
. : . : . : . : . : . :
JMFF028D16+ CACCTATA
JMFF050O07+ GAGCTTCTGTGGACTATTTGGACATTTCTNTTCTATATGACCTCTTTCTCCACACCTATA
                      ____________________________________________________________
consensus GAGCTTCTGTGGACTATTTGGACATTTCTNTTCTATATGACCTCTTTCTCCACACCTATA
 
. : . : . : . : . : . :
JMFF028D16+ GCACTTGTTTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF051M02+ TTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF026D08+ TTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF018F16+ TTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF050O07+ GCACTTGTTTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
                      ____________________________________________________________
consensus GCACTTGTTTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
 
. : . : . : . : . : . :
JMFF028D16+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF051M02+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF026D08+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF018F16+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF050O07+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
                      ____________________________________________________________
consensus GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
 
. : . : . : . : . : . :
JMFF028D16+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF051M02+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF026D08+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF018F16+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF050O07+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
                      ____________________________________________________________
consensus TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
 
. : . : . : . : . : . :
JMFF028D16+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF051M02+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF026D08+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF018F16+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF050O07+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
                      ____________________________________________________________
consensus CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
 
. : . : . : . : . : . :
JMFF028D16+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF051M02+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF026D08+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF018F16+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF050O07+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
                      ____________________________________________________________
consensus ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
 
. : . : . : . : . : . :
JMFF028D16+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF051M02+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF026D08+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF018F16+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF050O07+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
                      ____________________________________________________________
consensus ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
 
. : . : . : . : . : . :
JMFF028D16+ CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
JMFF051M02+ CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
JMFF026D08+ CCGATCATCGTAACGAGGCATATTCACCTACCCAGGCTTAGAAGACAACAGCGATTTGAT
JMFF018F16+ CCGATCATCGTAACGAGGCATATTC----ACC
JMFF050O07+ CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
                      ____________________________________________________________
consensus CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
 
. : . : . : . : . : . :
JMFF028D16+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAAC
JMFF051M02+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCGCAAC
JMFF026D08+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAAC
JMFF050O07+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAACC
                      ____________________________________________________________
consensus TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAACC