Contig 010316:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014C02Sequence574010316 (2)emb|CDP16941.1|4e-38unnamed protein product [Coffea canephora]397002549 (2)emb|CDP16941.1|1e-63unnamed protein product [Coffea canephora]
JMFF047B04Sequence628010316 (2)ref|XP_009765462.1|114PREDICTED: uncharacterized protein LOC104217006 [Nicotiana sylvestris]557002549 (2)emb|CDP16941.1|1e-110unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF047B04+                                           CAGTAACAAATTAATTTTTATATTTATA
                      ____________________________________________________________
consensus                                             CAGTAACAAATTAATTTTTATATTTATA
 
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JMFF047B04+           CCCGACCTAAATTTAAGGCTTATTAAACAAACATTTAATTTAAAAATATGACCAAATGTG
                      ____________________________________________________________
consensus             CCCGACCTAAATTTAAGGCTTATTAAACAAACATTTAATTTAAAAATATGACCAAATGTG
 
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JMFF014C02+                                                                 CCAATG
JMFF047B04+           ATCATTTATAATCAAATTGAAAGTCAAAAGAAAAGTGGTAGAAGAATTGAAGTACCAATG
                      ____________________________________________________________
consensus             ATCATTTATAATCAAATTGAAAGTCAAAAGAAAAGTGGTAGAAGAATTGAAGTACCAATG
 
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JMFF014C02+           GGTTGTTTCCTTTGAGTTGAGGATGATCGAAAGCGGGTTGAAGATGAGATTCTACACAGT
JMFF047B04+           GGTTGTTTCCTTTGAGTTGAGGATGATCGAAAGCGGGTTGAAGATGAGATTCTACACAGT
                      ____________________________________________________________
consensus             GGTTGTTTCCTTTGAGTTGAGGATGATCGAAAGCGGGTTGAAGATGAGATTCTACACAGT
 
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JMFF014C02+           CTATTAGATCTCCATCTGGACTCTGAATTGTCTTGATCGCAGGCTTGTTGATCGTCTTGA
JMFF047B04+           CTATTAGATCTCCATCTGGACTCTGAATTGTCTTGATCGCAGGCTTGTTGATCGTCTTGA
                      ____________________________________________________________
consensus             CTATTAGATCTCCATCTGGACTCTGAATTGTCTTGATCGCAGGCTTGTTGATCGTCTTGA
 
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JMFF014C02+           GATATGCCCTTATCCTCCTTAGTTTGAGAAGCTCTTGGCGTGGGCGGAATGTGCGGTTTG
JMFF047B04+           GATATGCCCTTATCCTCCTTAGTTTGAGAAGCTCTTGGCGTGGGCGGAATGTGCGGTTTG
                      ____________________________________________________________
consensus             GATATGCCCTTATCCTCCTTAGTTTGAGAAGCTCTTGGCGTGGGCGGAATGTGCGGTTTG
 
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JMFF014C02+           AAAGTAGGTAATTATCACCGGAGGCGGCGGCCGGAGACAGTGAAGAAGTAGCTGCGGCGA
JMFF047B04+           AAAGTAGGTAATTATCACCGGAGGCGGCGGCCGGAGACAGTGAAGAAGTAGCTGCGGCGA
                      ____________________________________________________________
consensus             AAAGTAGGTAATTATCACCGGAGGCGGCGGCCGGAGACAGTGAAGAAGTAGCTGCGGCGA
 
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JMFF014C02+           GAATGGAGAAAACAACAAACGTAGACGACATAATAACTACAGATGAAAATGTCTGGTTGG
JMFF047B04+           GAATGGAGAAAACAACAAACGTAGACGACATAATAACTACAGATGAAAATGTCTGGTTGG
                      ____________________________________________________________
consensus             GAATGGAGAAAACAACAAACGTAGACGACATAATAACTACAGATGAAAATGTCTGGTTGG
 
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JMFF014C02+           GTTTGAAAGAAGCCATATATATATATGTATATGTTAGTTTGTGGAGTGTTTGATGACAAC
JMFF047B04+           GTTTGAAAGAAGCCATATATATATATGTATATGTTAGTTTGTGGAGTGTTTGATGACAAC
                      ____________________________________________________________
consensus             GTTTGAAAGAAGCCATATATATATATGTATATGTTAGTTTGTGGAGTGTTTGATGACAAC
 
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JMFF014C02+           AGCGACAGCCATGGCTTCATTCCACATGGAAAAACACCCGCTGCGCTAGCTGCGCTGCTT
JMFF047B04+           AGCGACAGCCATGGCTTCATTCCACATGGAAAAACACCCGCTGCGCTAGCTGCGCTGCTT
                      ____________________________________________________________
consensus             AGCGACAGCCATGGCTTCATTCCACATGGAAAAACACCCGCTGCGCTAGCTGCGCTGCTT
 
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JMFF014C02+           CTACAGCGATGGCTGCCTCGCCATTTT                                 
JMFF047B04+           CTACAGCGATGGCTGCCTCGCCATTTTAAGAGAATCAAGAGAGAGAGAAGTTTGATGAAT
                      ____________________________________________________________
consensus             CTACAGCGATGGCTGCCTCGCCATTTTAAGAGAATCAAGAGAGAGAGAAGTTTGATGAAT