clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF041O01 | Sequence | 655 | 010292 (6) | emb|CDP01270.1| | 6e-67 | unnamed protein product [Coffea canephora] | 555 | 011221 (2) | ref|XP_009800928.1| | 1e-30 | PREDICTED: cirhin-like [Nicotiana sylvestris] |
JMFF050O03 | Sequence | 609 | 010292 (6) | emb|CDP01270.1| | 3e-64 | unnamed protein product [Coffea canephora] | 574 | 011221 (2) | ref|XP_009800928.1| | 3e-34 | PREDICTED: cirhin-like [Nicotiana sylvestris] |
JMFS033G11 | Sequence | 518 | 010292 (6) | emb|CDP01270.1| | 3e-60 | unnamed protein product [Coffea canephora] | |||||
JMFS064G12 | Sequence | 635 | 010292 (6) | emb|CDP01270.1| | 3e-66 | unnamed protein product [Coffea canephora] | |||||
JMFS128D04 | Sequence | 589 | 010292 (6) | emb|CDP01270.1| | 4e-65 | unnamed protein product [Coffea canephora] | |||||
JMFS166B11 | Sequence | 564 | 010292 (6) | emb|CDP01270.1| | 6e-68 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFS166B11+ TGGCAATGA
____________________________________________________________
consensus TGGCAATGA
. : . : . : . : . : . :
JMFS166B11+ TTTCTTGTGTGTTAATTCCTCTAAGCTAGAAGCACTATAAATTCGGACACATCCATCATC
JMFS033G11+ GACACATCCATCATC
JMFS128D04+ AAGCTAGAAGCACTATAAATTCGGACACATCCATCATC
JMFS064G12+ AAGCTAGAAGCACTATAAATTCGGACACATCCATCATC
JMFF050O03+ CTATAAATTCGGACACATCCATCATC
JMFF041O01+ AAGCTAGAAGCACTATAAATTCGGACACATCCATCATC
____________________________________________________________
consensus TTTCTTGTGTGTTAATTCCTCTAAGCTAGAAGCACTATAAATTCGGACACATCCATCATC
. : . : . : . : . : . :
JMFS166B11+ ACATGCAAAAGCTATGTGACTTTCTTCATTAACATGATCTTCTTCTTCAGAAAGCTCAAC
JMFS033G11+ ACATGCAAAAGCTATGTGACTTTCTTCATTAACATGATCTTCTTCTTCAGAAAGCTCAAC
JMFS128D04+ ACATGCAAAAGCTATGTGACTTTCTTCATTAACATGATCTTCTTCTTCAGAAAGCTCAAC
JMFS064G12+ ACATGCAAAAGCTATGTGACTTTCTTCATTAACATGATCTTCTTCTTCAGAAAGCTCAAC
JMFF050O03+ ACATGCAAAAGCTATGTGACTTTCTTCATTAACATGATCTTCTTCTTCAGAAAGCTCAAC
JMFF041O01+ ACATGCAAAAGCTATGTGACTTTCTTCATTAACATGATCTTCTTCTTCAGAAAGCTCAAC
____________________________________________________________
consensus ACATGCAAAAGCTATGTGACTTTCTTCATTAACATGATCTTCTTCTTCAGAAAGCTCAAC
. : . : . : . : . : . :
JMFS166B11+ AGAGTTGTCATCGTCCTCACTGTCCTCACTGTCCTCACTCTCACTGGCATTGCCATTTTC
JMFS033G11+ AGAGTTGTCATCGTCCTCACTGTCCTCACTGTCCTCACTCTCACTGGCATTGCCATTTTC
JMFS128D04+ AGAGTTGTCATCGTCCTCACTGTCCTCACTGTCCTCACTCTCACTGGCATTGCCATTTTC
JMFS064G12+ AGAGTTGTCATCGTCCTCACTGTCCTCACTGTCCTCACTCTCACTGGCATTGCCATTTTC
JMFF050O03+ AGAGTNGTCATCGTCCTCACTGTCCTCACTGTCCTCACTCTCACTGGCATTGCCATTTTC
JMFF041O01+ AGAGTTGTCATCGTCCTCACTGTCCTCACTGTCCTCACTCTCACTGGCATTGCCATTTTC
____________________________________________________________
consensus AGAGTTGTCATCGTCCTCACTGTCCTCACTGTCCTCACTCTCACTGGCATTGCCATTTTC
. : . : . : . : . : . :
JMFS166B11+ ATACTGTATTGAATCTGGCTTATCTTGCCGACTAGTGCAGGGTTGTGAAGCCATCTGCCA
JMFS033G11+ ATACTGTATTGAATCTGGCTTATCTTGCCGACTAGTGCAGGGTTGTGAAGCCATCTGCCA
JMFS128D04+ ATACTGTATTGAATCTGGCTTATCTTGCCGACTAGTGCAGGGTTGTGAAGCCATCTGCCA
JMFS064G12+ ATACTGTATTGAATCTGGCTTATCTTGCCGACTAGTGCAGGGTTGTGAAGCCATCTGCCA
JMFF050O03+ ATACTGTATTGAATCTGGCTTATCTTGCCGACTAGTGCAGGGTTGTGAAGCCATCTGCCA
JMFF041O01+ ATACTGTATTGAATCTGGCTTATCTTGCCGACTAGTGCAGGGTTGTGAAGCCATCTGCCA
____________________________________________________________
consensus ATACTGTATTGAATCTGGCTTATCTTGCCGACTAGTGCAGGGTTGTGAAGCCATCTGCCA
. : . : . : . : . : . :
JMFS166B11+ TATAGATACGCCTATAGAATCAAGAACAACCTTCTGTCTCAAATCAAATAAATCCCACTC
JMFS033G11+ TATAGATACGCCTATAGAATCAAGAACAACCTTCTGTCTCAAATCAAATAAATCCCACTC
JMFS128D04+ TATAGATACGCCTATAGAATCAAGAACAACCTTCTGTCTCAAATCAAATAAATCCCACTC
JMFS064G12+ TATAGATACGCCTATAGAATCAAGAACAACCTTCTGTCTCAAATCAAATAAATCCCACTC
JMFF050O03+ TATAGATACGCCTATAGAATCAAGAACAACCTTCTGTCTCAAATCAAATAAATCCCACTC
JMFF041O01+ TATAGATACGCCTATAGAATCAAGAACAACCTTCTGTCTCAAATCAAATAAATCCCACTC
____________________________________________________________
consensus TATAGATACGCCTATAGAATCAAGAACAACCTTCTGTCTCAAATCAAATAAATCCCACTC
. : . : . : . : . : . :
JMFS166B11+ CGAAACTGATCCATCAATACTCGACGAGAACAACCTTCCTGACGGCGAGCCTCTTGACCC
JMFS033G11+ CGAAACTGATCCATCAATACTCGACGAGAACAACCTTCCTGACGGCGAGCCTCTTGACCC
JMFS128D04+ CGAAACTGATCCATCAATACTCGACGAGAACAACCTTCCTGACGGCGAGCCTCTTGACCC
JMFS064G12+ CGAAACTGATCCATCAATACTCGACGAGAACAACCTTCCTGACGGCGAGCCTCTTGACCC
JMFF050O03+ CGAAACTGATCCATCAATACTCGACGAGAACAACCTTCCTGACGGCGAGCCTCTTGACCC
JMFF041O01+ CGAAACTGATCCATCAATACTCGACGAGAACAACCTTCCTGACGGCGAGCCTCTTGACCC
____________________________________________________________
consensus CGAAACTGATCCATCAATACTCGACGAGAACAACCTTCCTGACGGCGAGCCTCTTGACCC
. : . : . : . : . : . :
JMFS166B11+ CAGCCGGCACCAAACCAACGAAGAAATCCTTGAATTAGGATTCCCATGTATTCTAAGTTG
JMFS033G11+ CAGCCGGCACCAAACCAACGAAGAAATCCTTGAATTAGGATTCCCATGTATTCTAAGTTG
JMFS128D04+ CAGCCGGCACCAAACCAACGAAGAAATCCTTGAATTAGGATTCCCATGTATTCTAAGTTG
JMFS064G12+ CAGCCGGCACCAAACCAACGAAGAAATCCTTGAATTAGGATTCCCATGTATTCTAAGTTG
JMFF050O03+ CAGCCGGCACCAAACCAACGAAGAAATCCTTGAATTAGGATTCCCATGTATTCTAAGTTG
JMFF041O01+ CAGCCGGCACCAAACCAACGAAGAAATCCTTGAATTAGGATTCCCATGTATTCTAAGTTG
____________________________________________________________
consensus CAGCCGGCACCAAACCAACGAAGAAATCCTTGAATTAGGATTCCCATGTATTCTAAGTTG
. : . : . : . : . : . :
JMFS166B11+ ACAGTGCCAGCCAACGGAGCCGGGAGAGACCAGCCATATTTCAAGAGAGCCGTCCTCGCG
JMFS033G11+ ACAGTGCCAGCCAACGGAGCCGGGAGAGACCAGCCATATTTCAAGAGAGCCGTCCTCGCG
JMFS128D04+ ACAGTGCCAGCCAACGGAGCCGGGAGAGACCAGCCATATTTCAAGAGAGCCGTCCTCGCG
JMFS064G12+ ACAGTGCCAGCCAACGGAGCCGGGAGAGACCAGCCATATTTCAAGAGAGCCGTCCTCGCG
JMFF050O03+ ACAGTGCCAGCCAACGGAGCCGGGAGAGACCAGCCATATTTCAAGAGAGCCGTCCTCGCG
JMFF041O01+ ACAGTGCCAGCCAACGGAGCCGGGAGAGACCAGCCATATTTCAAGAGAGCCGTCCTCGCG
____________________________________________________________
consensus ACAGTGCCAGCCAACGGAGCCGGGAGAGACCAGCCATATTTCAAGAGAGCCGTCCTCGCG
. : . : . : . : . : . :
JMFS166B11+ AGCGGCGGCGACCTGGAAGTTGTCGGCGCTGGTGGCTAGGGCTACCACCGGCGATGGTCG
JMFS033G11+ AGCGGCGGCGACCTGGAAGTTGTCGGCGCTGGTGGCTAGGGCTACCACCGGCGATGGTCG
JMFS128D04+ AGCGGCGGCGACCTGGAAGTTGTCGGCGCTGGTGGCTAGGGCTACCACCGGCGATGGTCG
JMFS064G12+ AGCGGCGGCGACCTGGAAGTTGTCGGCGCTGGTGGCTAGGGCTACCACCGGCGATGGTCG
JMFF050O03+ AGCGGCGGCGACCTGGAAGTTGTCGGCGCTGGTGGCTAGGGCTACCACCGGCGATGGTCG
JMFF041O01+ AGCGGCGGCGACCTGGAAGTTGTCGGCGCTGGTGGCTAGGGCTACCACCGGCGATGGTCG
____________________________________________________________
consensus AGCGGCGGCGACCTGGAAGTTGTCGGCGCTGGTGGCTAGGGCTACCACCGGCGATGGTCG
. : . : . : . : . : . :
JMFS166B11+ CCATTCATATTCCAC
JMFS033G11+ CCATTCATATTCCACGTGGCCCC
JMFS128D04+ CCATTCATATTCCACGTGGCCCCGATACAGCTCGGGGAATAGCATCTCGTCTGAGGGGAA
JMFS064G12+ CCATTCATATTCCACGTGGCCCCGATACAGCTCGGGGAATAGCATCTCGTCTGAGGGGAA
JMFF050O03+ CCATTCATATTCCACGTGGCCCCGATACAGCTCGGGGAATAGCATCTCGTCTGAGGGGAA
JMFF041O01+ CCATTCATATTCCACGTGGCCCCGATACAGCTCGGGGAATAGCATCTCGTCTGAGGGGAA
____________________________________________________________
consensus CCATTCATATTCCACGTGGCCCCGATACAGCTCGGGGAATAGCATCTCGTCTGAGGGGAA
. : . : . : . : . : . :
JMFS128D04+ GGAGGAAACA
JMFS064G12+ GGAGGAAACAGCTCGCAGTCTGAAAGAAGTCTTGAGGAAA
JMFF050O03+ GGAGGAAACAGCTCGCAGTCTGAAAGAAGTCTTGAGGAAA
JMFF041O01+ GGAGGAAACAGCTCGCAGTCTGAAAGAAGTCTTGAGGAAACGGGGAATCGGTCTCGACGA
____________________________________________________________
consensus GGAGGAAACAGCTCGCAGTCTGAAAGAAGTCTTGAGGAAACGGGGAATCGGTCTCGACGA