| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009M07 | Sequence | 555 | 010236 (5) | ref|XP_009765667.1| | 4e-21 | PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian | |||||
| JMFF026F22 | Sequence | 589 | 010236 (5) | 769 | 008320 (4) | ref|XP_009765667.1| | 2e-35 | PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian | |||
| JMFF027M23 | Sequence | 609 | 010236 (5) | ref|XP_009765667.1| | 3e-32 | PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian | 731 | 008320 (4) | ref|XP_009765667.1| | 1e-30 | PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian |
| JMFF037M20 | Sequence | 570 | 010236 (5) | ref|XP_009765667.1| | 3e-27 | PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian | 791 | 008320 (4) | ref|XP_009765667.1| | 1e-36 | PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian |
| JMFF043D18 | Sequence | 607 | 010236 (5) | ref|XP_009765667.1| | 3e-32 | PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian | 640 | 008320 (4) | ref|XP_011095140.1| | 2e-09 | PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial |
This contig is upended
. : . : . : . : . : . :
JMFF027M23+ CTCCCCACATAGCACATCCCCTTCAGCAAGCAATT
JMFF037M20+ GCAAGCAATT
JMFF043D18+ CCCCACATAGCACATCCCCTTCAGCAAGCAATT
____________________________________________________________
consensus CTCCCCACATAGCACATCCCCTTCAGCAAGCAATT
. : . : . : . : . : . :
JMFF027M23+ GTACGTGTTGATTGTGGGCTCGCAACCAGCTCGGCCCATGCTTTCGAAAACCTCAAATGC
JMFF037M20+ GTACGTGTTGATTGTGGGCTCGCAACCAGCTCGGCCCATGCTTTCGAAAACCTCAAATGC
JMFF009M07+ CTCGCAACCAGCTCGGCCCATGCTTTCGAAAACCTCAAATGC
JMFF043D18+ GTACGTGTTGATTGTGGGCTCGCAACCAGCTCGGCCCATGCTTTCGAAAACCTCAAATGC
____________________________________________________________
consensus GTACGTGTTGATTGTGGGCTCGCAACCAGCTCGGCCCATGCTTTCGAAAACCTCAAATGC
. : . : . : . : . : . :
JMFF027M23+ CTGTTTCAACCGTCCTTTTTTGCAGAACGAGTTGATCACTGTGGTGAACATCGCTACATT
JMFF037M20+ CTGTTTCAACCGTCCTTTTTTGCAGAACGAGTTGATCACTGTGGTGAACATCGCTACATT
JMFF009M07+ CTGTTTCAACCGTCCTTTTTTGCAGAACGAGTTGATCACTGTGGTGAACATCGCTACATT
JMFF043D18+ CTGTTTCAACCGTCCTTTTTTGCAGAACGAGTTGATCACTGTGGTGAACATCGCTACATT
____________________________________________________________
consensus CTGTTTCAACCGTCCTTTTTTGCAGAACGAGTTGATCACTGTGGTGAACATCGCTACATT
. : . : . : . : . : . :
JMFF027M23+ GGGTTGAACCCCATTGTCTAACATGCGGTTTAGAACAGTTCTCGCTGTTTCAGGGTCATT
JMFF037M20+ GGGTTGAACCCCATTGTCTAACATGCGGTTTAGAACAGTTCTCGCTGTTTCAGGGTCATT
JMFF009M07+ GGGTTGAACCCCATTGTCTAACATGCGGTTTAGAACAGTTCTCGCTGTTTCAGGGTCATT
JMFF043D18+ GGGTTGAACCCCATTGTCTAACATGCGGTTTAGAACAGTTCTCGCTGTTTCAGGGTCATT
____________________________________________________________
consensus GGGTTGAACCCCATTGTCTAACATGCGGTTTAGAACAGTTCTCGCTGTTTCAGGGTCATT
. : . : . : . : . : . :
JMFF027M23+ TTTCTCGCAATTTTCACTCACCCAGATTGCGTGTGCGGAGCTATTTTCCTCGGATAGTTC
JMFF037M20+ TTTCTCGCAATTTTCACTCACCCAGATTGCGTGTGCGGAGCTATTTTCCTCGGATAGTTC
JMFF009M07+ TTTCTCGCAATTTTCACTCACCCAGATTGCGTGTGCGGAGCTATTTTCCTCGGATAGTTC
JMFF043D18+ TTTCTCGCAATTTTCACTCACCCAGATTGCGTGTGCGGAGCTATTTTCCTCGGATAGTTC
JMFF026F22+ TTTCACTCACCCAGATTGCGTGTGCGGAGCTATTTTCCTCGGATAGTTC
____________________________________________________________
consensus TTTCTCGCAATTTTCACTCACCCAGATTGCGTGTGCGGAGCTATTTTCCTCGGATAGTTC
. : . : . : . : . : . :
JMFF027M23+ AATTTCGCTTTGATTAGTTGAAACAAATGCATGTTTTGTGCTTAATTTATCTGGATTTTC
JMFF037M20+ AATTTCGCTTTGATTAGTTGAAACAAATGCATGTTTTGTGCTTAATTTATCTGGATTTTC
JMFF009M07+ AATTTCGCTTTGATTAGTTGAAACAAATGCATGTTTTGTGCTTAATTTATCTGGATTTTC
JMFF043D18+ AATTTCGCTTTGATTAGTTGAAACAAATGCATGTTTTGTGCTTAATTTATCTGGATTTTC
JMFF026F22+ AATTTCGCTTTGATTAGTTGAAACAAATGCATGTTTTGTGCTTAATTTATCTGGATTTTC
____________________________________________________________
consensus AATTTCGCTTTGATTAGTTGAAACAAATGCATGTTTTGTGCTTAATTTATCTGGATTTTC
. : . : . : . : . : . :
JMFF027M23+ AGCAAGACTAGACTTTTCTTGTGCTATATTTCGGGCTAATGGATGAAAATTGCCGGGGTT
JMFF037M20+ AGCAAGACTAGACTTTTCTTGTGCTATATTTCGGGCTAATGGATGAAAATTGCCGGGGTT
JMFF009M07+ AGCAAGACTAGACTTTTCTTGTGCTATATTTCGGGCTAATGGATGAAAATTGCCGGGGTT
JMFF043D18+ AGCAAGACTAGACTTTTCTTGTGCTATATTTCGGGCTAATGGATGAAAATTGCCGGGGTT
JMFF026F22+ AGCAAGACTAGACTTTTCTTGTGCTATATTTCGGGCTAATGGATGAAAATTGCCGGGGTT
____________________________________________________________
consensus AGCAAGACTAGACTTTTCTTGTGCTATATTTCGGGCTAATGGATGAAAATTGCCGGGGTT
. : . : . : . : . : . :
JMFF027M23+ CTTGATAAAGGAGGTGGGGGTTTTAGGAAAAGGAGGAAGTAGGATAGAAGAGGCAGAAGA
JMFF037M20+ CTTGATAAAGGAGGTGGGGGTTTTAGGAAAAGGAGGAAGTAGGATAGAAGAGGCAGAAGA
JMFF009M07+ CTTGATAAAGGAGGTGGGGGTTTTAGGAAAAGGAGGAAGTAGGATAGAAGAGGCAGAAGA
JMFF043D18+ CTTGATAAAGGAGGTGGGGGTTTTAGGAAAAGGAGGAAGTAGGATAGAAGAGGCAGAAGA
JMFF026F22+ CTTGATAAAGGAGGTGGGGGTTTTAGGAAAAGGAGGAAGTAGGATAGAAGAGGCAGAAGA
____________________________________________________________
consensus CTTGATAAAGGAGGTGGGGGTTTTAGGAAAAGGAGGAAGTAGGATAGAAGAGGCAGAAGA
. : . : . : . : . : . :
JMFF027M23+ GAGAGAAGGTGGAGGGTGGAGTGAAAAATGCATGGCAGAATCGCAGAGATGATGAAATCT
JMFF037M20+ GAGAGAAGGTGGAGGGTGGAGTGAAAAATGCATGGCAGAATCGCAGAGATGATGAAATCT
JMFF009M07+ GAGAGAAGGTGGAGGGTGGAGTGAAAAATGCATGGCAGAATCACAGAGATGATGAAATCT
JMFF043D18+ GAGAGAAGGTGGAGGGTGGAGTGAAAAATGCATGGCAGAATCGCAGAGATGATGAAATCT
JMFF026F22+ GAGAGAAGGTGGAGGGTGGAGTGAAAAATGCATGGCAGAATCGCAGAGATGATGAAATCT
____________________________________________________________
consensus GAGAGAAGGTGGAGGGTGGAGTGAAAAATGCATGGCAGAATCGCAGAGATGATGAAATCT
. : . : . : . : . : . :
JMFF027M23+ GTAGTCCTGGGAAGGGAAGAAGAAAAGGTCGAAGCCAATTTGGGAGTTTCACCATCTGGG
JMFF037M20+ GTAGTCCTGGGAAGGGAAGAAGAAAAGGTCGAAGCCAATTTGGGAGTTTCACCATCTGGG
JMFF009M07+ GTAGTCCTGGGAAGGGAAGAAGAAAAGGTCGAAGCCAATTTGGGAGTTTCACCATCTGGG
JMFF043D18+ GTAGTCCTGGGAAGGGAAGAAGAAAAGGTCGAAGCCAATTTGGGAGTTTCACCATCTGGG
JMFF026F22+ GTAGTCCTGGGAAGGGAAGAAGAAAAGGTCGAAGCCAATTTGGGAGTTTCACCATCTGGG
____________________________________________________________
consensus GTAGTCCTGGGAAGGGAAGAAGAAAAGGTCGAAGCCAATTTGGGAGTTTCACCATCTGGG
. : . : . : . : . : . :
JMFF027M23+ TTAGAGAATTTGTTGTCTGTAGTTCTGCCCCAAT
JMFF037M20+ TTAGAGAATTTGTTGTCTGT
JMFF009M07+ TTAGAGAATTTGTTGTCTGT
JMFF043D18+ TTAGAGAATTTGTTGTCTGTAGTTCTGCCTCAAT
JMFF026F22+ TTAGAGAATTTGTTGTCTGTAGTTCTGCCCCAATATCTTTTCGTATTGCGCTTCAAAACC
____________________________________________________________
consensus TTAGAGAATTTGTTGTCTGTAGTTCTGCCCCAATATCTTTTCGTATTGCGCTTCAAAACC
. : . : . : . : . : . :
JMFF026F22+ CAATTCATTAATTTGTTGTAATTTGTCTTGGGATTAGGATAAGGGCTGTGCAGAATCCGA
____________________________________________________________
consensus CAATTCATTAATTTGTTGTAATTTGTCTTGGGATTAGGATAAGGGCTGTGCAGAATCCGA
. : . : . : . : . : . :
JMFF026F22+ GAAATCCGATGGACTCCAAACTCGGGAAAATTTTTGCATTCTTGAGGCCGAATCGGATAT
____________________________________________________________
consensus GAAATCCGATGGACTCCAAACTCGGGAAAATTTTTGCATTCTTGAGGCCGAATCGGATAT
. : . : . : . : . : . :
JMFF026F22+ GAGTAATCCGACATGTTTTTTTTGAATGTAGTAATCCGACATGTTATTCTTTTAAAAGTC
____________________________________________________________
consensus GAGTAATCCGACATGTTTTTTTTGAATGTAGTAATCCGACATGTTATTCTTTTAAAAGTC