Contig 010212:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018K19Sequence557010212 (2)755020178ref|XP_009785469.1|2e-57PREDICTED: transcription factor bHLH122-like [Nicotiana sylvestris] ref|XP_00978
JMSF016E18Sequence409010212 (2)ref|XP_006365809.1|9e-14PREDICTED: transcription factor bHLH128-like isoform X1 [Solanum tuberosum] ref753023488ref|XP_009785469.1|2e-61PREDICTED: transcription factor bHLH122-like [Nicotiana sylvestris] ref|XP_00978

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF016E18+ TAGACTGGCCATGAACC
                      ____________________________________________________________
consensus TAGACTGGCCATGAACC
 
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JMSF016E18+ TCCCGAAAGCTTGCTGCACATNGGAGCTAGAATTATGAGCATTTAGCAGCTGATCGAAAT
                      ____________________________________________________________
consensus TCCCGAAAGCTTGCTGCACATNGGAGCTAGAATTATGAGCATTTAGCAGCTGATCGAAAT
 
. : . : . : . : . : . :
JMSF016E18+ CGTCCCTTGCATAACCTCCGCCGCCGCCGATACCGCTAGTATCAGAAGTATTACTGTTCA
                      ____________________________________________________________
consensus CGTCCCTTGCATAACCTCCGCCGCCGCCGATACCGCTAGTATCAGAAGTATTACTGTTCA
 
. : . : . : . : . : . :
JMSF016E18+ AATAGCTTGCGAAATATGAACTTGGCGCGGACCGGTACCGCGTCAAGCCGGAAGTCATNT
JMFF018K19+ CAAGCCGGAAGTCATCT
                      ____________________________________________________________
consensus AATAGCTTGCGAAATATGAACTTGGCGCGGACCGGTACCGCGTCAAGCCGGAAGTCATCT
 
. : . : . : . : . : . :
JMSF016E18+ GCTGCTGCTGTTGCTGATATCGCCTTTGATCCATGACAACTTTTCCTCGTTTTTTCCCCG
JMFF018K19+ GCTGCTGCTGTTGCTGATATCGCCTTTGATCCATGACAACTTTTCCTCGTTTTTTCCCCG
                      ____________________________________________________________
consensus GCTGCTGCTGTTGCTGATATCGCCTTTGATCCATGACAACTTTTCCTCGTTTTTTCCCCG
 
. : . : . : . : . : . :
JMSF016E18+ GNGTCAATTNTTAGTAAACTCCAAAACNCAAGAAAAAAAAAATTCCCAGAAATAACAAGA
JMFF018K19+ GCGTCAATTNTTAGTAAACTCCAAAACNCAAGAAAAAAAAAATTCCCAGAAATAACAAGA
                      ____________________________________________________________
consensus GCGTCAATTNTTAGTAAACTCCAAAACNCAAGAAAAAAAAAATTCCCAGAAATAACAAGA
 
. : . : . : . : . : . :
JMSF016E18+ AGAATGTTCAAATAATTTTGAAGAGAACTCAAGGCGCACAAGCTAGAGGTCTAGATTCCA
JMFF018K19+ AGAATGTTCAAATAATTTTGAAGAGAACTCAAGGCGCACAAGCTAGAGGTCTAGATTCCA
                      ____________________________________________________________
consensus AGAATGTTCAAATAATTTTGAAGAGAACTCAAGGCGCACAAGCTAGAGGTCTAGATTCCA
 
. : . : . : . : . : . :
JMSF016E18+ GAATGCCCTTTCCTTTACTTTAATATCAG
JMFF018K19+ GAATGCCCTTTCCTTTACTTTAATATCAGTTGTTTTCGAACAAAGTATATGTGAATAATA
                      ____________________________________________________________
consensus GAATGCCCTTTCCTTTACTTTAATATCAGTTGTTTTCGAACAAAGTATATGTGAATAATA
 
. : . : . : . : . : . :
JMFF018K19+ AAAGCAATGAACCCAGCAAAGAAGATAAGATAGAAAACGATATAAACCACTGAAACAGAG
                      ____________________________________________________________
consensus AAAGCAATGAACCCAGCAAAGAAGATAAGATAGAAAACGATATAAACCACTGAAACAGAG
 
. : . : . : . : . : . :
JMFF018K19+ AATCTGTTTCCAAATTCCCCAGACAACAAAACAACAAACTGCAACACGACACAGAATTGA
                      ____________________________________________________________
consensus AATCTGTTTCCAAATTCCCCAGACAACAAAACAACAAACTGCAACACGACACAGAATTGA
 
. : . : . : . : . : . :
JMFF018K19+ AGCGAAACCTCTCTCTTCCTTCCTCTTGTTTATTAACCCAAAAGTCACCGGAGAAAAGGA
                      ____________________________________________________________
consensus AGCGAAACCTCTCTCTTCCTTCCTCTTGTTTATTAACCCAAAAGTCACCGGAGAAAAGGA
 
. : . : . : . : . : . :
JMFF018K19+ GCCCCGTGGCGGCGACGCCGTGAAGGTGGTGGCAGCGGAGGAGGAGAGAAGAGAAGAGAA
                      ____________________________________________________________
consensus GCCCCGTGGCGGCGACGCCGTGAAGGTGGTGGCAGCGGAGGAGGAGAGAAGAGAAGAGAA
 
. : . : . : . : . : . :
JMFF018K19+ GAGAAGTGGAGAAGTGTGCAGCCAATGAGAAGGCAAGCACAACAGAGATCTCGGGGTTTC
                      ____________________________________________________________
consensus GAGAAGTGGAGAAGTGTGCAGCCAATGAGAAGGCAAGCACAACAGAGATCTCGGGGTTTC