Contig 010179:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011E10Sequence579010179 (2)emb|CDP03194.1|6e-40unnamed protein product [Coffea canephora]761008217 (2)emb|CBI27940.3|2e-24unnamed protein product [Vitis vinifera]
JMFF020K12Sequence546010179 (2)emb|CDP03194.1|3e-35unnamed protein product [Coffea canephora]762008217 (2)emb|CBI27940.3|4e-25unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+                                                                 GGCTTA
JMFF011E10+                                TCCCCAATCCAAACATCAACTAAATCCCCTACCGGCTTA
                      ____________________________________________________________
consensus                                  TCCCCAATCCAAACATCAACTAAATCCCCTACCGGCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           ATAAGACCCTCCATATCATCAAAGTTACTGCCCAGCCCCTCACAGCATACATTAACATAC
JMFF011E10+           ATAAGACCCTCCATATCATCAAAGTTACTGCCCAGCCCCTCACAGCATACATTAACATAC
                      ____________________________________________________________
consensus             ATAAGACCCTCCATATCATCAAAGTTACTGCCCAGCCCCTCACAGCATACATTAACATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           CCAAGAATTGAACCAACCAAATCCTTAACCTCTTCTACCAGTTTCTTCTTCTTTTTCGGT
JMFF011E10+           CCAAGAATTGAACCAACCAAATCCTTAACCTCTTCTACCAGTTTCTTCTTCTTTTTCGGT
                      ____________________________________________________________
consensus             CCAAGAATTGAACCAACCAAATCCTTAACCTCTTCTACCAGTTTCTTCTTCTTTTTCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           TTCATCTCAAGAGCCTTGAAATCAACCATAAACCGAAACAACTCATACATAACTGGCGCA
JMFF011E10+           TTCATCTCAAGAGCCTTGAAATCAACCATAAACCGAAACAACTCATACATAACTGGCGCA
                      ____________________________________________________________
consensus             TTCATCTCAAGAGCCTTGAAATCAACCATAAACCGAAACAACTCATACATAACTGGCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           ATCAACACAATGTTTTTCCATGAATTAAATGAAGCGGAACGAGCAACAATAAGCTGAAAC
JMFF011E10+           ATCAACACAATGTTTTTCCATGAATTAAATGAAGCGGAACGAGCAACAATAAGCTGAAAC
                      ____________________________________________________________
consensus             ATCAACACAATGTTTTTCCATGAATTAAATGAAGCGGAACGAGCAACAATAAGCTGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           AAATCTTTTATGGACGTAAACCAATTCGAAGGCCGACCATTTTCCGTTGAACAAGAACTC
JMFF011E10+           AAATCTTTTATGGACGTAAACCAATTCGAAGGCCGACCATTTTCCGTTGAACAAGAACTC
                      ____________________________________________________________
consensus             AAATCTTTTATGGACGTAAACCAATTCGAAGGCCGACCATTTTCCGTTGAACAAGAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           CGAAAAGCTAAACCCGAATAAAACCAGATTGTTTCTAGAGGGGGGTTGGGTTTAGACAGC
JMFF011E10+           CGAAAAGCTAAACCCGAATAAAACCAGATTGTTTCTAGAGGGGGGTTGGGTTTAGACAGC
                      ____________________________________________________________
consensus             CGAAAAGCTAAACCCGAATAAAACCAGATTGTTTCTAGAGGGGGGTTGGGTTTAGACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           AGTAATTCTCGAAAGTTTGAGCTCAAAGATGAAAACTTTTCGGAATTGGGATCCCAGGGA
JMFF011E10+           AGTAATTCTCGAAAGTTTGAGCTCAAAGATGAAAACTTTTCGGAATTGGGATCCCAGGGA
                      ____________________________________________________________
consensus             AGTAATTCTCGAAAGTTTGAGCTCAAAGATGAAAACTTTTCGGAATTGGGATCCCAGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           GTGTCCAAAACTTCTTGGATTAATCTGTTTAGCGCAGTTTGATAATTTTCTCCAAGAAAG
JMFF011E10+           GTGTCCAAAACTTCTTGGATTAATCTGTTTAGCGCAGTTTGATAATTTTCTCCAAGAAAG
                      ____________________________________________________________
consensus             GTGTCCAAAACTTCTTGGATTAATCTGTTTAGCGCAGTTTGATAATTTTCTCCAAGAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020K12+           CAGTCAAATTCGTGGCATTCGATCAGTGTTGAAGCCATGGTTGCTCCAGAGTTAGAACTC
JMFF011E10+           CAGTCAAATTCGTGGCATTCGATCAGTGTTGAAGCCATGGTTGCTCCAGAGTTAGAACTC
                      ____________________________________________________________
consensus             CAGTCAAATTCGTGGCATTCGATCAGTGTTGAAGCCATGGTTGCTCCAGAGTTAGAACTC