Contig 010116:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035D02Sequence547010116 (2)
JMSF052N13Sequence566006324 (2)997010116 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052N13+ TTGNCANCGANTGAAGATGCTGNCTTGAAGGCCAGAATGA
                      ____________________________________________________________
consensus TTGNCANCGANTGAAGATGCTGNCTTGAAGGCCAGAATGA
 
. : . : . : . : . : . :
rJMSF052N13+ ATTTNGAAGAAGNAGTAGGCAATGTGNAGCTCTTAACTTGTTGTGAACAAATTGTTATGA
                      ____________________________________________________________
consensus ATTTNGAAGAAGNAGTAGGCAATGTGNAGCTCTTAACTTGTTGTGAACAAATTGTTATGA
 
. : . : . : . : . : . :
rJMSF052N13+ AGTGCAATTATCAAGGTGACAATGTACAACTTTAAGATGGGTGCAAGAGATGCATCCTCC
                      ____________________________________________________________
consensus AGTGCAATTATCAAGGTGACAATGTACAACTTTAAGATGGGTGCAAGAGATGCATCCTCC
 
. : . : . : . : . : . :
rJMSF052N13+ ACTGCTCCTTTGAAGCTTGCCTGGCTGGTACCACATGGGAAACAAACGGCTCTCTCACCG
                      ____________________________________________________________
consensus ACTGCTCCTTTGAAGCTTGCCTGGCTGGTACCACATGGGAAACAAACGGCTCTCTCACCG
 
. : . : . : . : . : . :
rJMSF052N13+ TTTCACATAGCAACAAGAATCATCCTCACTTGGATATAATTACTTCTGAAGCACATACTA
                      ____________________________________________________________
consensus TTTCACATAGCAACAAGAATCATCCTCACTTGGATATAATTACTTCTGAAGCACATACTA
 
. : . : . : . : . : . :
rJMSF052N13+ GTTAAATGGCGGTTGTCATTGCAGAATGCGCCTCATGATCATCATCTTCGTCTGCATCTT
                      ____________________________________________________________
consensus GTTAAATGGCGGTTGTCATTGCAGAATGCGCCTCATGATCATCATCTTCGTCTGCATCTT
 
. : . : . : . : . : . :
rJMSF052N13+ CATCACCGAAGTTTTGGTTTATCAAATCTTCCCTGGATCGGAGTACATTTTCATGCCAGT
                      ____________________________________________________________
consensus CATCACCGAAGTTTTGGTTTATCAAATCTTCCCTGGATCGGAGTACATTTTCATGCCAGT
 
. : . : . : . : . : . :
rJMSF052N13+ TAAGGTGCTCCCGGCATACCCTGAAGGAACAACATATTGATATAGAGCATTCATATTCAT
                      ____________________________________________________________
consensus TAAGGTGCTCCCGGCATACCCTGAAGGAACAACATATTGATATAGAGCATTCATATTCAT
 
. : . : . : . : . : . :
rJMSF035D02+ ATTGACAATGGACATCTCTAATATAAG
rJMSF052N13+ AAGCTTAATGGAGCAATGAAGAACGTGATACAAATTGACAATGGACATCTCTAATATAAG
                      ____________________________________________________________
consensus AAGCTTAATGGAGCAATGAAGAACGTGATACAAATTGACAATGGACATCTCTAATATAAG
 
. : . : . : . : . : . :
rJMSF035D02+ ATGGATGCAGGAGGACTGGAGATGCATCATTCACTGCACTGTACTACTCTGTTTTCAAGT
rJMSF052N13+ ATGGATGCAGGAGGACTGGAGATGCATCATTCACTGCACTGTACTACTCTGTTTTCAAGT
                      ____________________________________________________________
consensus ATGGATGCAGGAGGACTGGAGATGCATCATTCACTGCACTGTACTACTCTGTTTTCAAGT
 
. : . : . : . : . : . :
rJMSF035D02+ ACGCTTCTAATGAATTGTTAGGACAAATGATGATTTCTACTTGGTGGAATAAAAACTACT
rJMSF052N13+ ACGCTTCTAATGAATTGTTAGGACAAATGATGATTTCTACTTGGTGGAATAAAAACTACT
                      ____________________________________________________________
consensus ACGCTTCTAATGAATTGTTAGGACAAATGATGATTTCTACTTGGTGGAATAAAAACTACT
 
. : . : . : . : . : . :
rJMSF035D02+ CTGTTTTGGATCAGGTATAAGATGAAGTCGTGCTAGCATCCGGATAAAACTTTTCTTTAC
rJMSF052N13+ CTGTTTTGGATCAGGTATAAGATGAAGTCGTGCTAGCATCCGGATAAAACTTTTCTTTAC
                      ____________________________________________________________
consensus CTGTTTTGGATCAGGTATAAGATGAAGTCGTGCTAGCATCCGGATAAAACTTTTCTTTAC
 
. : . : . : . : . : . :
rJMSF035D02+ TTGACAGCAATTGAAGATGCTGNCTATGAAGGACGAGAATGAATTTTGGAAGAAGGAAGT
rJMSF052N13+ TTGACAGCAATTGAAGATGCTGACTATGAAGGACGAGAATGAATTTTGGAAGAAGGAAGT
                      ____________________________________________________________
consensus TTGACAGCAATTGAAGATGCTGACTATGAAGGACGAGAATGAATTTTGGAAGAAGGAAGT
 
. : . : . : . : . : . :
rJMSF035D02+ AGGCAATGTGGAACCTCTTAGCTTGTTGTCAACAAATTATTATGAACTGCAATTAATCAA
rJMSF052N13+ AGGCAATGTGGAACCTCTTAGCTTGTTGTCAACAAATTATTATGAACTGCAATTAATCAA
                      ____________________________________________________________
consensus AGGCAATGTGGAACCTCTTAGCTTGTTGTCAACAAATTATTATGAACTGCAATTAATCAA
 
. : . : . : . : . : . :
rJMSF035D02+ GGTGACAATGTACAACTGTAAGATGGGTGCAAGAGATGCATCCTTAGCTTCACTGCTCCT
rJMSF052N13+ ---GACAATGTACAACTGTAAGATGGGTGCAAGAGATGCATCCTTAGCTTCACTGCTCCT
                      ____________________________________________________________
consensus GGTGACAATGTACAACTGTAAGATGGGTGCAAGAGATGCATCCTTAGCTTCACTGCTCCT
 
. : . : . : . : . : . :
rJMSF035D02+ TTGAACAATGATCAAGGATTNCACAGTATTTGCTGGT
rJMSF052N13+ TTGAACAATGATCAAGGATTACACAGTATTTGCTGGTGCAATTTGCAGTCATTCATAATC
                      ____________________________________________________________
consensus TTGAACAATGATCAAGGATTACACAGTATTTGCTGGTGCAATTTGCAGTCATTCATAATC
 
. : . : . : . : . : . :
rJMSF052N13+ TTCTTCTTTTTTTGAAATTTGTAATTAAGGAATATGCAAATGTGTTTGTAAACATTCAAC
                      ____________________________________________________________
consensus TTCTTCTTTTTTTGAAATTTGTAATTAAGGAATATGCAAATGTGTTTGTAAACATTCAAC