Contig 010115:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF052M13Sequence141010115 (2)
JMSF052M14Sequence575022276924010115 (2)ref|XP_004246274.1|6e-114PREDICTED: serine/threonine-protein kinase HT1 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052M14+ AAAGCTGGACCTTNCATGTGGCAT
                      ____________________________________________________________
consensus AAAGCTGGACCTTNCATGTGGCAT
 
. : . : . : . : . : . :
rJMSF052M14+ TAAGCTTCGCTGTTGACATTGCTAGAGCCCTGGAGTGTTTACATGCTAATGGGATTATAC
                      ____________________________________________________________
consensus TAAGCTTCGCTGTTGACATTGCTAGAGCCCTGGAGTGTTTACATGCTAATGGGATTATAC
 
. : . : . : . : . : . :
rJMSF052M14+ ATAGAGACCTTAAACCTGACAACTTGTTGCTCACAGCCAATCAGAAGTCTGTAAAGCTTG
                      ____________________________________________________________
consensus ATAGAGACCTTAAACCTGACAACTTGTTGCTCACAGCCAATCAGAAGTCTGTAAAGCTTG
 
. : . : . : . : . : . :
rJMSF052M14+ CAGATTTTGGGCTTGCAAGGGAAGAGACTCTCACTGAAATGATGACAGCGGAAACTGGGA
                      ____________________________________________________________
consensus CAGATTTTGGGCTTGCAAGGGAAGAGACTCTCACTGAAATGATGACAGCGGAAACTGGGA
 
. : . : . : . : . : . :
rJMSF052M14+ CATACAGATGGATGGCACCCGAGCTGTACAGCACTGTGACTCTGCGTCAAGGGGAGAAAA
                      ____________________________________________________________
consensus CATACAGATGGATGGCACCCGAGCTGTACAGCACTGTGACTCTGCGTCAAGGGGAGAAAA
 
. : . : . : . : . : . :
rJMSF052M14+ AGCATTACAATAATAAGGTTGATGTATATAGCTTTGGGATCGTCCTGTGGGAATTGCTAA
                      ____________________________________________________________
consensus AGCATTACAATAATAAGGTTGATGTATATAGCTTTGGGATCGTCCTGTGGGAATTGCTAA
 
. : . : . : . : . : . :
rJMSF052M14+ CAAACCGCATGCCATTTGAGGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCGTTTA
                      ____________________________________________________________
consensus CAAACCGCATGCCATTTGAGGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCGTTTA
 
. : . : . : . : . : . :
rJMSF052M14+ AGCAAGAGAGACCTGTTATACTCCCGGAAGAGATTTCACCTGATTTGGCGTTCATCATGC
                      ____________________________________________________________
consensus AGCAAGAGAGACCTGTTATACTCCCGGAAGAGATTTCACCTGATTTGGCGTTCATCATGC
 
. : . : . : . : . : . :
rJMSF052M14+ AGTCATCGTGGGTTGAGGACCCTAATATGCGGCCAAGCTTTAGTCAAATTATTCGGATGC
                      ____________________________________________________________
consensus AGTCATCGTGGGTTGAGGACCCTAATATGCGGCCAAGCTTTAGTCAAATTATTCGGATGC
 
. : . : . : . : . : . :
rJMSF052M14+ TCAACGAATATCTGCTCACGCTCCCATCCCCGCCAACCCCATCGCCAGCCCCAGACACCG
                      ____________________________________________________________
consensus TCAACGAATATCTGCTCACGCTCCCATCCCCGCCAACCCCATCGCCAGCCCCAGACACCG
 
. : . : . : . : . : . :
rJMSF052M14+ CTGAGGAGGCAATGGCTAGCAACGACTCCATAGTGGAGTTCTCCTCAAGAGCAAAAGGAA
                      ____________________________________________________________
consensus CTGAGGAGGCAATGGCTAGCAACGACTCCATAGTGGAGTTCTCCTCAAGAGCAAAAGGAA
 
. : . : . : . : . : . :
rJMSF052M13+ TCGCTGCAAAGAAGNCCAAAAANTCNCAGTGATCGA
rJMSF052M14+ AATTCTCCTTTCTTCGCCAACTTTTCGCTGCAAAGAAGGCCAAAAACTCACAGTGATCGA
                      ____________________________________________________________
consensus AATTCTCCTTTCTTCGCCAACTTTTCGCTGCAAAGAAGGCCAAAAACTCACAGTGATCGA
 
. : . : . : . : . : . :
rJMSF052M13+ TCTGGAANTAACCGCAAAAGGGCGCCCCTTTATCCCGCCTTCCAGGCATGGGCAGATGNG
rJMSF052M14+ TCTGGAAATAACCGCAAAAGGGCGCCCCTCTATCCCGCCTTCCAGGCATGGGCAGATGCG
                      ____________________________________________________________
consensus TCTGGAAATAACCGCAAAAGGGCGCCCCTTTATCCCGCCTTCCAGGCATGGGCAGATGCG
 
. : . : . : . : . : . :
rJMSF052M13+ NANGAAGCTTGGCAGCCNCCTNACAATGGTGCAGGCAGGAGATGA
rJMSF052M14+ AACGAAGCTTGGCAGCCGCCTTACAATGGTGCAGGCAGGAGATGATGAAACAACATAGCG
                      ____________________________________________________________
consensus AACGAAGCTTGGCAGCCGCCTTACAATGGTGCAGGCAGGAGATGATGAAACAACATAGCG
 
. : . : . : . : . : . :
rJMSF052M14+ CGGGAAGGCTATGTTCTGGAGAATCATCGTATTGACAAATAAAATGATCTAAAGGAAAGG
                      ____________________________________________________________
consensus CGGGAAGGCTATGTTCTGGAGAATCATCGTATTGACAAATAAAATGATCTAAAGGAAAGG
 
. : . : . : . : . : . :
rJMSF052M14+ GTACCTTAAGAGATGTTTTGTTTAGGTGACAACCTAAATTGTAAAGGAACGTGTTCCAAA
                      ____________________________________________________________
consensus GTACCTTAAGAGATGTTTTGTTTAGGTGACAACCTAAATTGTAAAGGAACGTGTTCCAAA