| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003D14 | Sequence | 312 | 013209 (9) | ref|XP_010272313.1| | 3e-12 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nelumbo nucifera] | 766 | 010110 (6) | ref|XP_009628932.1| | 6e-65 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana tomentosiformis] |
| JMSF008B15 | Sequence | 293 | 024099 | emb|CBI29071.3| | 1e-29 | unnamed protein product [Vitis vinifera] | 765 | 010110 (6) | ref|XP_009628932.1| | 1e-71 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana tomentosiformis] |
| JMSF008O22 | Sequence | 258 | 013209 (9) | ref|XP_010272313.1| | 4e-11 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nelumbo nucifera] | 748 | 010110 (6) | ref|XP_009782517.1| | 5e-36 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana sylvestris] |
| JMSF046P04 | Sequence | 747 | 013209 (9) | ref|XP_006353070.1| | 2e-71 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Solanum tuberosum] | 634 | 010110 (6) | ref|XP_009782517.1| | 6e-48 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana sylvestris] |
| JMSF048C19 | Sequence | 153 | 010110 (6) | ||||||||
| JMSF051L22 | Sequence | 618 | 016898 | ref|XP_010272313.1| | 2e-52 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nelumbo nucifera] | 752 | 010110 (6) | ref|XP_009628932.1| | 6e-65 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF008B15+ ATCCAACAGTTTGCAGTGTATACAGAGAGGAAGTATTAGATGAAATAA
rJMSF003D14+ ATCCAACAGTTTGCAGTGTATACAGAGAGGAAGT-TTAGATGAAATAA
____________________________________________________________
consensus ATCCAACAGTTTGCAGTGTATACAGAGAGGAAGTATTAGATGAAATAA
. : . : . : . : . : . :
rJMSF008B15+ TCAAAGCACTAGACTGTCAAGTGTTCAATGAAAGTGTCCAGGAACAATCCACCAGAGCTC
rJMSF003D14+ TCAAAGCACTAGACTGTCAAGTGTTCAATGAAAGTGTCCAGGAACAATCCACCAGAGCTC
____________________________________________________________
consensus TCAAAGCACTAGACTGTCAAGTGTTCAATGAAAGTGTCCAGGAACAATCCACCAGAGCTC
. : . : . : . : . : . :
rJMSF008B15+ TCCTGATTCTCGGGGGGCGATTTTCCTACACCGGAGAGCCAGTGGTGGAGCAATGGGTGT
rJMSF046P04+ CCTACACCGGAGAGCCAGTGGTGGAGCAATGGGTGT
rJMSF003D14+ TCCTGATTCTCGGGGGGCGATTTTCCTACACCGGAGAGCCAGTGGTGGAGCAATGGGTGT
____________________________________________________________
consensus TCCTGATTCTCGGGGGGCGATTTTCCTACACCGGAGAGCCAGTGGTGGAGCAATGGGTGT
. : . : . : . : . : . :
rJMSF008B15+ TAAAAGAAGCAGGCTATGATGACTTCTTGGTGGATTCTTATTACAGAAACTGCTCATCCA
rJMSF046P04+ TAAAAGAAGCAGGCTATGATGACTTCTTGGTGGATTCTTATTACAGAAACTGCTCATCCA
rJMSF003D14+ TAAAAGAAGCAGGCTATGATGACTTCTTGGTGGATTCTTATTACAGAAACTGCTCATCCA
____________________________________________________________
consensus TAAAAGAAGCAGGCTATGATGACTTCTTGGTGGATTCTTATTACAGAAACTGCTCATCCA
. : . : . : . : . : . :
rJMSF008B15+ TCTCTGATGAATACATGCACCAGAACAAATGTGATGAGTTGATGGAATCATGGCAGAGGA
rJMSF046P04+ TCTCTGATGAATACATGCACCAGAACAAATGTGATGAGTTGATGGAATCATGGCAGAGGA
rJMSF008O22+ CAGAACAAATGTGATGAGTTGATGGAATCATGGCAGAGGA
rJMSF003D14+ TCTCTGATGAATACATGCACCAGAACAAATGTGATGAGTTGATGGAATCATGGCAGAGGA
rJMSF051L22+ CAGAACAAATGTGATGAGTTGATGGAATCATGGCAGAGGA
____________________________________________________________
consensus TCTCTGATGAATACATGCACCAGAACAAATGTGATGAGTTGATGGAATCATGGCAGAGGA
. : . : . : . : . : . :
rJMSF008B15+ AAACAGCAATGGTGCTGCTCACCAATGGAAACCAGAGACTGCTGGCAGCACTTGTGGATT
rJMSF046P04+ AAACAGCAATGGTGCTGCTCACCAATGGAAACCAGAGACTGCTGGCAGCACTTGTGGATT
rJMSF008O22+ AAACAGCAATGGTGCTGCTCACCAATGGAAACCAGAGACTGCTGGCAGCACTTGTGGATT
rJMSF003D14+ AAACAGCAATGGTGCTGCTCACCAATGGAAACCAGAGACTGCTGGCAGCACTTGTGGATT
rJMSF051L22+ AAACAGCAATGGTGCTGCTCACCAATGGAAACCAGAGACTGCTGGCAGCACTTGTGGATT
____________________________________________________________
consensus AAACAGCAATGGTGCTGCTCACCAATGGAAACCAGAGACTGCTGGCAGCACTTGTGGATT
. : . : . : . : . : . :
rJMSF008B15+ CCATAGCCAATGGGATCCCTTGCTTAGCCAGAGCAAGCCTGGTGACCGTTTCTTGGATGA
rJMSF046P04+ CCATAGCCAATGGGATCCCTTGCTTAGCCAGAGCAAGCCTGGTGACCGTTTCTTGGATGA
rJMSF008O22+ CCATAGCCAATGGGATCCCTTGCTTAGCCAGAGCAAGCCTGGTGACCGTTTCTTGGATGA
rJMSF003D14+ CCATAGCCAATGGGATCCCTTGCTTAGCCAGAGCAAGCCTGGTGACCGTTTCTTGGATGA
rJMSF051L22+ CCATAGCCAATGGGATCCCTTGCTTAGCCAGAGCAAGCCTGGTGACCGTTTCTTGGATGA
____________________________________________________________
consensus CCATAGCCAATGGGATCCCTTGCTTAGCCAGAGCAAGCCTGGTGACCGTTTCTTGGATGA
. : . : . : . : . : . :
rJMSF008B15+ GCAATTTCTTCCATTCCATTGAAGACACAAGCCTTAAATCTGCAGCATCCTCAATCCTAG
rJMSF046P04+ GCAATTTCTTCCATTCCATTGAAGACACAAGCCTTAAATCTGCAGCATCCTCAATCCTAG
rJMSF008O22+ GCAATTTCTTCCATTCCATTGAAGACACAAGCCTTAAATCTGCAGCATCCTCAATCCTAG
rJMSF003D14+ GCAATTTCTTCCATTCCATTGAAGACACAAGCCTTAAATCTGCAGCATCCTCAATCCTAG
rJMSF051L22+ GCAATTTCTTCCATTCCATTGAAGACACAAGCCTTAAATCTGCAGCATCCTCAATCCTAG
____________________________________________________________
consensus GCAATTTCTTCCATTCCATTGAAGACACAAGCCTTAAATCTGCAGCATCCTCAATCCTAG
. : . : . : . : . : . :
rJMSF008B15+ TCCCTCTGCTCACCCAACTCTTAAACCATAAAAACTCCCTCGAAGAAAGACTCCTCTCTT
rJMSF046P04+ TCCCTCTGCTCACCCAACTCTTAAACCATAAAAACTCCCTCGAAGAAAGACTCCTCTCTT
rJMSF008O22+ TCCCTCTGCTCACCCAACTCTTAAACCATAAAAACTCCCTCGAAGAAAGACTCCTCTCTT
rJMSF003D14+ TCCCTCTGCTCACCCAACTCTTAAACCATAAAAACTCCCTCGAAGAAAGACTCCTCTCTT
rJMSF051L22+ TCCCTCTGCTCACCCAACTCTTAAACCATAAAAACTCCCTCGAAGAAAGACTCCTCTCTT
____________________________________________________________
consensus TCCCTCTGCTCACCCAACTCTTAAACCATAAAAACTCCCTCGAAGAAAGACTCCTCTCTT
. : . : . : . : . : . :
rJMSF008B15+ CATATTCATTACTTGGTCTCGCAAAGAATTCAGAATGCATTTGTAAGTTGACAACTTCAG
rJMSF046P04+ CATATTCATTACTTGGTCTCGCAAAGAATTCAGGATGCATTTGTAAGTTGACAACTTCAG
rJMSF008O22+ CATATTCATTACTTGGTCTCGCAAAGAATTCAGAATGCATTTGTAAGTTGACAACTTCAG
rJMSF048C19+ TTGGTCTCGCAAAGAATTCAGAATGCATTTGTAAGTGGACAANTTCAG
rJMSF003D14+ CATATTCATTACTTGGTCTCGCAAAGAATTCAGAATGCATTTGTAAGTTGACAACTTCAG
rJMSF051L22+ CATATTCATTACTTGGTCTCGCAAAGAATTCAGAATGCATTTGTAAGTTGACAACTTCAG
____________________________________________________________
consensus CATATTCATTACTTGGTCTCGCAAAGAATTCAGAATGCATTTGTAAGTTGACAACTTCAG
. : . : . : . : . : . :
rJMSF008B15+ ACAAGGAGCTAATGACTAACCTTCACAAACTGTCCAAGGTTTCCAGGACAGCACAAGAGC
rJMSF046P04+ ACAAGGAGCTAATGACTAACCTTCACAAACTGTCCAAGGTTTCCAGGACAGCACAAGAGC
rJMSF008O22+ ACAAGGAGCTAATGACTAACCTTCACAAACTGTCCAAGGTTTCCAGGACAGCACAAGAGC
rJMSF048C19+ ACANGGAGNTAATGANTANCCTTCNCAAACTGTCCAAGGTTTCCAGGACAGCACAAGAGC
rJMSF003D14+ ACAAGGAGCTAATGACTAACCTTCACAAACTGTCCAAGGTTTCCAGGACAGCACAAGAGC
rJMSF051L22+ ACAAGGAGCTAATGACTAACCTTCACAAACTGTCCAAGGTTTCCAGGACAGCACAAGAGC
____________________________________________________________
consensus ACAAGGAGCTAATGACTAACCTTCACAAACTGTCCAAGGTTTCCAGGACAGCACAAGAGC
. : . : . : . : . : . :
rJMSF008B15+ TTACCTCAATTCTCTCAAGCAGCCGGCAACAAGCCTGAGATTCTGCACCACTGCATCTTT
rJMSF046P04+ TTACCTCAATTCTCTCAAGCAGCCGGCAACAAGCCTGAGATTCTGCACCACTGCATCTTT
rJMSF008O22+ TTACCTCAATTCTCTCAAGCAGCCGGCAACAAGCCTGAGATTCTGCACCACTGCATCTTT
rJMSF048C19+ TTACCTCAATTNTCTCAA
rJMSF003D14+ TTACCTCAATTCTCTCAAGCAGCCGGCAACAAGCCTGAGATTCTGCACCACTGCATCTTT
rJMSF051L22+ TTACCTCAATTCTCTCAAGCAGCCGGCAACAAGCCTGAGATTCTGCACCACTGCATCTTT
____________________________________________________________
consensus TTACCTCAATTCTCTCAAGCAGCCGGCAACAAGCCTGAGATTCTGCACCACTGCATCTTT
. : . : . : . : . : . :
rJMSF008B15+ AAATGCCTGTACAAGTCTCTATGTATAAAAGATAGTTATGATTCCTGTAGAAACCAT
rJMSF046P04+ AAATGCCTGTACAAGTCTCTATGTATAAAAGATAGTTATGATTCCTGTAGAAACCAT
rJMSF008O22+ AAATGCCTGTACAAGTCTCTATGTATAAAAGATAGTTATGATTCCTGTAGAAACCAT
rJMSF003D14+ AAATGCCTGTACAAGTCTCTATGTATAAAAGATAGTTATGATTCCTGTAGAAACCAT
rJMSF051L22+ AAATGCCTGTACAAGTCTCTATGTATAAAAGATAGTTATGATTCCTGTAGAAACCATTGC
____________________________________________________________
consensus AAATGCCTGTACAAGTCTCTATGTATAAAAGATAGTTATGATTCCTGTAGAAACCATTGC