| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF035I23 | Sequence | 647 | 010094 (10) | emb|CDP03629.1| | 2e-74 | unnamed protein product [Coffea canephora] | 682 | 010094 (10) | ref|XP_006349675.1| | 1e-125 | PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-lik |
| JMSF036C13 | Sequence | 657 | 010094 (10) | emb|CDP03629.1| | 3e-75 | unnamed protein product [Coffea canephora] | 748 | 010094 (10) | ref|XP_006349675.1| | 1e-143 | PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-lik |
| JMSF044B22 | Sequence | 725 | 010094 (10) | ref|XP_004290655.1| | 1e-100 | PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Fr | 717 | 010094 (10) | ref|XP_006349675.1| | 5e-128 | PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-lik |
| JMSF048K04 | Sequence | 624 | 010094 (10) | gb|KJB23085.1| | 1e-74 | hypothetical protein B456_004G080000 [Gossypium raimondii] | 768 | 010094 (10) | ref|XP_006349675.1| | 9e-132 | PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-lik |
| JMSF050K12 | Sequence | 656 | 010094 (10) | emb|CDP03629.1| | 2e-74 | unnamed protein product [Coffea canephora] | 808 | 010094 (10) | ref|XP_006349675.1| | 8e-154 | PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-lik |
This contig is upended
. : . : . : . : . : . :
JMSF035I23- TCATCATCATTATATCGTTTCTCAGG
JMSF050K12- GAAGAGATCATCATCATCATTATATCGTTTCTCAGG
JMSF048K04- AGG
JMSF036C13- GAAGAGATCATCATCATCATTATATCGTTTCTCAGG
____________________________________________________________
consensus GAAGAGATCATCATCATCATTATATCGTTTCTCAGG
. : . : . : . : . : . :
JMSF035I23- CACAAAACATAACGGCAAACAATGGCCACTCTTGCGTCTTCCTCTTCCATATCCTCTGTC
JMSF050K12- CACAAAACATAACGGCAAACAATGGCCACTCTTGCGTCTTCCTCTTCCATATCCTCTGTC
JMSF048K04- CACAAAACATGACGGCAAACAATGGCCACTCTTGCGTCTTCCTCTTCCATATCCTCTGTC
JMSF036C13- CACAAAACATAACGGCAAACAATGGCCACTCTTGCGTCTTCCTCTTCCATATCCTCTGTC
JMSF044B22- GGCAAACAATGGCCACTCTTGCGTCTTCCTCTTCCATATCCTCTGTC
____________________________________________________________
consensus CACAAAACATAACGGCAAACAATGGCCACTCTTGCGTCTTCCTCTTCCATATCCTCTGTC
. : . : . : . : . : . :
JMSF035I23- CTCTTCTCTTCTCCCAAATTCTCCTCTCCTTCTCTCTTCCCTCTTCAACGCCTCTCACTA
JMSF050K12- CTCTTCTCTTCTCCCAAATTCTCCTCTCCTTCTCTCTTCCCTCTTCAACGCCTCTCACTA
JMSF048K04- CTCTTCTCTTCTCCCAAATTCTCCTCTCCTTCTCTCTTCCCTCTTCAACGCCTCTCACTA
JMSF036C13- CTCTTCTCTTCTCCCAAATTCTCCTCTCCTTCTCTCTTCCCTCTTCAACGCCTCTCACTA
JMSF044B22- CTCTTCTCTTCTCCCAAATTCTCCTCTCCTTCTCTCTTCCCTCTTCAACGCCTCTCACTA
____________________________________________________________
consensus CTCTTCTCTTCTCCCAAATTCTCCTCTCCTTCTCTCTTCCCTCTTCAACGCCTCTCACTA
. : . : . : . : . : . :
JMSF035I23- TGCCCCTCCTCTCTCTCTTCCTCTTTCTCCATTTCATCATCTTTTACACCCCACCTCACA
JMSF050K12- TGCCCCTCCTCTCTCTCTTCCTCTTTCTCCATTTCATCATCTTTTACACCCCACCTCACA
JMSF048K04- TGCCCCTCCTCTCTCTCTTCCTCTTTCTCCATTTCATCATCTTTTACACCCCACCTCACA
JMSF036C13- TGCCCCTCCTCTCTCTCTTCCTCTTTCTCCATTTCATCATCTTTTACACCCCACCTCACA
JMSF044B22- TGCCCCTCCTCTCTCTCTTCCTCTTTCTCCATTTCATCATCTTTTACACCCCACCTCACA
____________________________________________________________
consensus TGCCCCTCCTCTCTCTCTTCCTCTTTCTCCATTTCATCATCTTTTACACCCCACCTCACA
. : . : . : . : . : . :
JMSF035I23- TCCCCAACCCGGACCACTGTCTCTCCGGTCCGGTTCAGCGTCCGGGCCGCCGCCGAGAAG
JMSF050K12- TCCCCAACCCGGACCACTGTCTCTCCGGTCCGGTTCAGCGTCCGGGCCGCCGCCGAGAAG
JMSF048K04- TCCCCAACCCGGACCACTGTCTCTCCGGTCCGGTTCAGCGTCCGGGCCGCCGCCGAGAAG
JMSF036C13- TCCCCAACCCGGACCACTGTCTCTCCGGTCCGGTTCAGCGTCCGGGCCGCCGCCGAGAAG
JMSF044B22- TCCCCAACCCGGACCACTGTCTCTCCGGTCCGGTTCAGCGTCCGGGCCGCCGCCGAGAAG
____________________________________________________________
consensus TCCCCAACCCGGACCACTGTCTCTCCGGTCCGGTTCAGCGTCCGGGCCGCCGCCGAGAAG
. : . : . : . : . : . :
JMSF035I23- AAGAAGGTGCTTATAGTCAACACCAACAGCGGTGGGCACGCCGTGATCGGCTTCTACTTT
JMSF050K12- AAGAAGGTGCTTATAGTCAACACCAACAGCGGTGGGCACGCCGTGATCGGCTTCTACTTT
JMSF048K04- AAGAAGGTGCTTATAGTCAACACCAACAGCGGTGGGCACGCCGTGATCGGCTTCTACTTT
JMSF036C13- AAGAAGGTGCTTATAGTCAACACCAACAGCGGTGGGCACGCCGTGATCGGCTTCTACTTT
JMSF044B22- AAGAAGGTGCTTATAGTCAACACCAACAGCGGTGGGCACGCCGTGATCGGCTTCTACTTT
____________________________________________________________
consensus AAGAAGGTGCTTATAGTCAACACCAACAGCGGTGGGCACGCCGTGATCGGCTTCTACTTT
. : . : . : . : . : . :
JMSF035I23- GCCAAACAGCTTCTGGGTAACGGCCATGAAGTCACCATCTTGACCGTCGGCGAGGAGGCC
JMSF050K12- GCCAAACAGCTTCTGGGTAACGGCCATGAAGTCACCATCTTGACCGTCGGCGAGGAGGCC
JMSF048K04- GCCAAACAGCTTCTGGGTAACGGCCATGAAGTCACCATCTTGACCGTCGGCGACGAGGGC
JMSF036C13- GCCAAACAGCTTCTGGGTAACGGCCATGAAGTCACCATCTTGACCGTCGGCGAGGAGGCC
JMSF044B22- GCCAAACAGCTTCTGGGTAACGGCCATGAAGTCACCATCTTGACCGTCGGCGAGGAGGCC
____________________________________________________________
consensus GCCAAACAGCTTCTGGGTAACGGCCATGAAGTCACCATCTTGACCGTCGGCGAGGAGGCC
. : . : . : . : . : . :
JMSF035I23- TCTGACAAGATGAAGAAGCCTCCTTTTAGCAGATTCTCAGAAATTGTGGAGGGTGGTGGG
JMSF050K12- TCTGACAAGATGAAGAAGCCTCCTTTTAGCAGATTCTCAGAAATTGTGGAGGGTGGTGGG
JMSF048K04- TCCGACAAGATGAAGAAGCCTCCTTTTAGCAGATTCTCAGAAATTGTGGAGGGTGGTGGG
JMSF036C13- TCTGACAAGATGAAGAAGCCTCCTTTTAGCAGATTCTCAGAAATTGTGGAGGGTGGTGGG
JMSF044B22- TCTGACAAGATGAAGAAGCCTCCTTTTAGCAGATTCTCAGAAATTGTGGAGGGTGGTGGG
____________________________________________________________
consensus TCTGACAAGATGAAGAAGCCTCCTTTTAGCAGATTCTCAGAAATTGTGGAGGGTGGTGGG
. : . : . : . : . : . :
JMSF035I23- AAGACAGTATGGGGTAATCCAGCAGATGTGGGGAAGGTGTTGGAGGGCCAAGTATTTGAT
JMSF050K12- AAGACAGTATGGGGTAATCCAGCAGATGTGGGGAAGGTGTTGGAGGGCCAAGTATTTGAT
JMSF048K04- AAGACAGTATGGGGTAATCCAGCAGATGTGGGGAAGGTGTTGGAGGGCCAAGTATTTGAC
JMSF036C13- AAGACAGTATGGGGTAATCCAGCAGATGTGGGGAAGGTGTTGGAGGGCCAAGTATTTGAT
JMSF044B22- AAGACAGTATGGGGTAATCCAGCAGATGTGGGGAAGGTGTTGGAGGGCCAAGTATTTGAT
____________________________________________________________
consensus AAGACAGTATGGGGTAATCCAGCAGATGTGGGGAAGGTGTTGGAGGGCCAAGTATTTGAT
. : . : . : . : . : . :
JMSF035I23- GCTGTTTTGGATAACAATGGCAAAGACCTGGACACGGTAAAGCCAGTGGCAGACTGGGCA
JMSF050K12- GCTGTTTTGGATAACAATGGCAAAGACCTGGACACGGTAAAGCCAGTGGCAGACTGGGCA
JMSF048K04- GTTGTTTTGGATAACAATGGCAAGGACCTGGACACAGTAAAGCCAGTGGCAGACTGGGCA
JMSF036C13- GCTGTTTTGGATAACAATGGCAAAGACCTGGACACGGTAAAGCCAGTGGCAGACTGGGCA
JMSF044B22- GCTGTTTTGGATAACAATGGCAAAGACCTGGACACGGTAAAGCCAGTGGCAGACTGGGCA
rJMSF050K12+ GACACNGTAAAGCCAGTGGCAGACTGGGCA
____________________________________________________________
consensus GCTGTTTTGGATAACAATGGCAAAGACCTGGACACGGTAAAGCCAGTGGCAGACTGGGCA
. : . : . : . : . : . :
JMSF035I23- AAGAGTTGTGGAGTGAAACAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
JMSF050K12- AAGAGTTGTGGAGTGAAACAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
JMSF048K04- AAGAGTTGTGGAGTGAAACAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
JMSF036C13- AAGAGTTGTGGAGTGAAACAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
JMSF044B22- AAGAGTTGTGGAGTGAAACAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
rJMSF036C13+ CAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
rJMSF050K12+ AAGAGTTGTGGAGTGAAACAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
rJMSF048K04+ TTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
____________________________________________________________
consensus AAGAGTTGTGGAGTGAAACAATTTTTGTTCATCAGCAGTGCTGGGATCTACAAGCCAACT
. : . : . : . : . : . :
JMSF035I23- GAGGAGCCTCCCCACATTG
JMSF050K12- GAGGAGCCTCCCCACATTGA
JMSF048K04- GAGGAGCCTCCCCACATTGA
JMSF036C13- GAGGAGCCTCCCCACATTGAA
JMSF044B22- GAGGAGCCTCCCC-ACATTGAAGGGGAAACTGTTAAAGCTGATTCTGGTCATGCTACAGT
rJMSF035I23+ GGAAACTGTTAAAGCTGATTCTGGTCATGCTACAGT
rJMSF036C13+ GAGGAGCCTCCCC-ACATTGAAGGGGAAACTGTTAAAGCTGATTCTGGTCATGCTACAGT
rJMSF050K12+ GAGGAGCCTCCCC-ACATTGAAGGGGAAACTGTTAAAGCTGATTCTGGTCATGCTACAGT
rJMSF044B22+ GAGCCTCCCCACATTGAAGGGGAAAACTGTTAAAGCTGATTCTGGTCATGCTACAGT
rJMSF048K04+ GAGGAGCCTCCCCCACATTGAAGGGGAAACTGTTAAGGCTGATTCAGGTCATGCTACAGT
____________________________________________________________
consensus GAGGAGCCTCCCCACATTGGAAGGGGAAACTGTTAAAGCTGATTCTGGTCATGCTACAGT
. : . : . : . : . : . :
JMSF044B22- AGAGAAGTACATTTCAGAGGTTTTCAGCATCTGGGCATCCTTTCGCCCACAATACATGAT
rJMSF035I23+ AGAGAAGTACATTTCAGAGGTTTTCAGCATCTGGGCATCCTTTCGCCCACAATACATGAT
rJMSF036C13+ AGAGAAGTACATTTCAGAGGTTTTCAGCATCTGGGCATCCTTTCGCCCACAATACATGAT
rJMSF050K12+ AGAGAAGTACATTTCAGAGGTTTTCAGCATCTGGGCATCCTTTCGCCCACAATACATGAT
rJMSF044B22+ AGAGAAGTACATTTCAGAGGTTTTCAGCATCTGGGCATCCTTTCGCCCACAATACATGAT
rJMSF048K04+ AGAGAAGTACATTTCAGAGGTTTTCAGCATCTGGGCATCCTTTCGCCCACAATACATGAT
____________________________________________________________
consensus AGAGAAGTACATTTCAGAGGTTTTCAGCATCTGGGCATCCTTTCGCCCACAATACATGAT
. : . : . : . : . : . :
JMSF044B22- CGGCTCTGGCAACAACAA
rJMSF035I23+ CGGCTCTGGCAACAACAAAGATTGTGAAGAATGGTTCTTTGACCGTATTGTAAGAGGCAG
rJMSF036C13+ CGGCTCTGGCAACAACAAAGATTGTGAAGAATGGTTCTTTGACCGTATTGTAAGAGGCAG
rJMSF050K12+ CGGCTCTGGCAACAACAAAGATTGTGAAGAATGGTTCTTTGACCGTATTGTAAGAGGCAG
rJMSF044B22+ CGGCTCTGGCAACAACAAAGATTGTGAAGAATGGTTCTTTGACCGTATTGTAAGAGGCAG
rJMSF048K04+ CGGCTCTGGCAACAACAAAGATTGTGAAGAATGGTTCTTTGACCGTATTGTAAGAGGCAG
____________________________________________________________
consensus CGGCTCTGGCAACAACAAAGATTGTGAAGAATGGTTCTTTGACCGTATTGTAAGAGGCAG
. : . : . : . : . : . :
rJMSF035I23+ ACCAGTCCCAATCCCGGGCTCTGGTATGCACCTAACGAATATTTCTCACGTTAGAGACCT
rJMSF036C13+ ACCAGTCCCAATCCCGGGCTCTGGTATGCAGCTAACGAATATTTCTCACGTTAGAGACCT
rJMSF050K12+ ACCAGTCCCAATCCCGGGCTCTGGTATGCAGCTAACGAATATTTCTCACGTTAGAGACCT
rJMSF044B22+ ACCAGTCCCAATCCCGGGCTCTGGTATGCAGCTAACGAATATTTCTCACGTTAGAGACCT
rJMSF048K04+ ACCAGTCCCAATCCCGGGCTCTGGTATGCAGCTAACGAATATTTCTCACGTTAGAGACCT
____________________________________________________________
consensus ACCAGTCCCAATCCCGGGCTCTGGTATGCAGCTAACGAATATTTCTCACGTTAGAGACCT
. : . : . : . : . : . :
rJMSF035I23+ TTCGTCCATGCTTACTGTGGCTGTTGAGAACCCAGACGCAGCAAGTGGCCACATCTTCAA
rJMSF036C13+ TTCGTCCATGCTTACTGTGGCTGTTGAGAACCCAGACGCAGCAAGTGGCCACATCTTCAA
rJMSF050K12+ TTCGTCCATGCTTACTGTGGCTGTTGAGAACCCAGACGCAGCAAGTGGCCACATCTTCAA
rJMSF044B22+ TTCGTCCATGCTTACTGTGGCTGTTGAGAACCCAGACGCAGCAAGTGGCCACATCTTCAA
rJMSF048K04+ TTCGTCCATGCTTACTGTGGCTGTTGAGAACCCAGACGCAGCAAGTGGCCACATCTTCAA
____________________________________________________________
consensus TTCGTCCATGCTTACTGTGGCTGTTGAGAACCCAGACGCAGCAAGTGGCCACATCTTCAA
. : . : . : . : . : . :
rJMSF035I23+ CTGTGTGAGCGACCGTGCCATAACGCTGGATGGCATGGCCAAGTTTTGTGCCCAGGCTGC
rJMSF036C13+ CTGTGTGAGCGACCGTGCCATAACGCTGGATGGCATGGCCAAGTTTTGTGCCCAGGCTGC
rJMSF050K12+ CTGTGTGAGCGACCGTGCCATAACGCTGGATGGCATGGCCAAGTTTTGTGCCCAGGCTGC
rJMSF044B22+ CTGTGTGAGCGACCGTGCCATAACGCTGGATGGCATGGCCAAGTTTTGTGCCCAGGCTGC
rJMSF048K04+ CTGTGTGAGCGACCGTGCCATAACGCTGGATGGCATGGCCAAGTTTTGTGCCCAGGCTGC
____________________________________________________________
consensus CTGTGTGAGCGACCGTGCCATAACGCTGGATGGCATGGCCAAGTTTTGTGCCCAGGCTGC
. : . : . : . : . : . :
rJMSF035I23+ TGGGAAGCCCCTTCAGATTGTTCATTATGACCCCAAAGCTGTGGGAATTGATGCCAAGAA
rJMSF036C13+ TGGGAAGCCCCTTCAGATTGTTCATTATGACCCCAAAGCTGTGGGAATTGATGCCAAGAA
rJMSF050K12+ TGGGAAGCCCCTTCAGATTGTTCATTATGACCCCAAAGCTGTGGGAATTGATGCCAAGAA
rJMSF044B22+ TGGGAAGCCCCTTCAGATTGTTCATTATGACCCCAAAGCTGTGGGAATTGATGCCAAGAA
rJMSF048K04+ TGGGAAGCCCCTTCAGATTGTTCATTATGACCCCAAAGCTGTGGGAATTGATGCCAAGAA
____________________________________________________________
consensus TGGGAAGCCCCTTCAGATTGTTCATTATGACCCCAAAGCTGTGGGAATTGATGCCAAGAA
. : . : . : . : . : . :
rJMSF035I23+ AGCCTTCCCTTTCCGCAATATGCACTTCTATGCTGAGCCAAGAGCTGCCAAGGAGATTCT
rJMSF036C13+ AGCCTTCCCTTTCCGCAATATGCACTTCTATGCTGAGCCAAGAGCTGCCAAGGAGATTCT
rJMSF050K12+ AGCCTTCCCTTTCCGCAATATGCACTTCTATGCTGAGCCAAGAGCTGCCAAGGAGATTCT
rJMSF044B22+ AGCCTTCCCTTTCCGCAATATGCACTTCTATGCTGAGCCAAGAGCTGCCAAGGAGATTCT
rJMSF048K04+ AGCCTTCCCTTTCCGCAATATGCACTTCTATGCTGAGCCAAGAGCTGCCAAGGAGATTCT
____________________________________________________________
consensus AGCCTTCCCTTTCCGCAATATGCACTTCTATGCTGAGCCAAGAGCTGCCAAGGAGATTCT
. : . : . : . : . : . :
rJMSF035I23+ TGGATGGCAGGGTACAACTAACCTTCCAGAGGACTTAAAGGAACGATTTGAAGAGTATGT
rJMSF036C13+ TGGATGGCAGGGTACAACTAACCTTCCAGAAGACTTAAAGGAACGATTTGAAGAGTATGT
rJMSF050K12+ TGGATGGCAGGGTACAACTAACCTTCCAGAAGACTTAAAGGAACGATTTGAAGAGTATGT
rJMSF044B22+ TGGATGGCAGGGTACAACTAACCTTCCAGAAGACTTAAAGGAACGATTTGAAGAGTATGT
rJMSF048K04+ TGGATGGCAGGGTACAACTAACCTTCCAGAAGACTTAAAGGAACGATTTGAAGAGTATGT
____________________________________________________________
consensus TGGATGGCAGGGTACAACTAACCTTCCAGAAGACTTAAAGGAACGATTTGAAGAGTATGT
. : . : . : . : . : . :
rJMSF035I23+ AAAGATCGGCAGAGACAAGAAGGAGATCAAATTTGAACTAGACGATAAGATACTTGAATC
rJMSF036C13+ AAAGATCGGCAGAGACAAGAAGGAGATCAAATTTGAACTAGACGATAAGATACTTGAATC
rJMSF050K12+ AAAGATCGGCAGAGACAAGAAGGAGATCAAATTTGAACTAGACGATAAGATACTTGAATC
rJMSF044B22+ AAAGATCGGCAGAGACAAGAAGGAGATCAAATTTGAACTAGACGATAAGATACTTGAATC
rJMSF048K04+ AAAGATCGGCAGAGACAAGAAGGAGATCAAATTTGAACTAGACGATAAGATACTTGAATC
____________________________________________________________
consensus AAAGATCGGCAGAGACAAGAAGGAGATCAAATTTGAACTAGACGATAAGATACTTGAATC
. : . : . : . : . : . :
rJMSF035I23+ CCTCAAAGTACCAGTGGCTGCTGCTTGATCCAGAATAAGCCCACCATTCTATGTACTATG
rJMSF036C13+ CCTCAAAGTACCAGTGGCTGCTGCTTGATCCAGAATAAGCCCACCATTCTATGTACTATG
rJMSF050K12+ CCTCAAAGTACCAGTGGCTGCTGCTTGATCCAGAATAAGCCCACCATTCTATGTACTATG
rJMSF044B22+ CCTCAAAGTACCAGTGGCTGCTGCTTGATCCAGAATAAGCCCACCATTCTATGTACTATG
rJMSF048K04+ CCTCAAAGTACCAGTGGCTGCTGCTTGATCCAGAATAAGCCCACCATTCTATGTACTATG
____________________________________________________________
consensus CCTCAAAGTACCAGTGGCTGCTGCTTGATCCAGAATAAGCCCACCATTCTATGTACTATG
. : . : . : . : . : . :
rJMSF035I23+ ATTGTATTCTTTTCCCTCACTACCCAACCAGAACTAGTTGCAAAAT
rJMSF036C13+ ATTGTATTCTTTTCCCTCACTACCCAACCAGAACTAGTTGCAAAATG
rJMSF050K12+ ATTGTATTCTTTTCCCTCACTACCCAACCAGAACTAGTTGCAAAATGTGGCCAAAGAGA
rJMSF044B22+ ATTGTATTCTTTTCCCTCACTACCCAACCAGAACTAGTTGCAAAATGTGGCCAAAGAGA
rJMSF048K04+ ATTGTATTCTTTTCCCTCACTACCCAACCAGAACTAGTTGCAAAATGTGGCCAAAGAGAT
____________________________________________________________
consensus ATTGTATTCTTTTCCCTCACTACCCAACCAGAACTAGTTGCAAAATGTGGCCAAAGAGAT