Contig 010081:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027I18Sequence626012153 (3)ref|XP_004238963.1|2e-85PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 729010081 (3)ref|XP_004238963.1|1e-55PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990
JMSF037L12Sequence702012153 (3)ref|XP_004238963.1|3e-116PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 729010081 (3)ref|XP_004238963.1|6e-57PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990
JMSF045F04Sequence718012153 (3)ref|XP_004238963.1|2e-96PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 764010081 (3)ref|XP_004238963.1|2e-54PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027I18+ C
rJMSF037L12+ C
rJMSF045F04+ GCAACTCATGTTATTAAATGGCCATTCACTAGAAGGAAGAGTCC
                      ____________________________________________________________
consensus GCAACTCATGTTATTAAATGGCCATTCACTAGAAGGAAGAGTCC
 
. : . : . : . : . : . :
rJMSF027I18+ CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
rJMSF037L12+ CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
rJMSF045F04+ CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
                      ____________________________________________________________
consensus CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
 
. : . : . : . : . : . :
rJMSF027I18+ GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
rJMSF037L12+ GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
rJMSF045F04+ GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
                      ____________________________________________________________
consensus GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
 
. : . : . : . : . : . :
rJMSF027I18+ TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
rJMSF037L12+ TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
rJMSF045F04+ TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
                      ____________________________________________________________
consensus TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
 
. : . : . : . : . : . :
rJMSF027I18+ TGCTTGAGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
rJMSF037L12+ TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
rJMSF045F04+ TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
                      ____________________________________________________________
consensus TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
 
. : . : . : . : . : . :
rJMSF027I18+ GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
rJMSF037L12+ GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
rJMSF045F04+ GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
                      ____________________________________________________________
consensus GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
 
. : . : . : . : . : . :
rJMSF027I18+ CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
rJMSF037L12+ CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
rJMSF045F04+ CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
                      ____________________________________________________________
consensus CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
 
. : . : . : . : . : . :
rJMSF027I18+ CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
rJMSF037L12+ CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
rJMSF045F04+ CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
                      ____________________________________________________________
consensus CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
 
. : . : . : . : . : . :
rJMSF027I18+ AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
rJMSF037L12+ AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
rJMSF045F04+ AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
                      ____________________________________________________________
consensus AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
 
. : . : . : . : . : . :
rJMSF027I18+ CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
rJMSF037L12+ CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
rJMSF045F04+ CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
                      ____________________________________________________________
consensus CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
 
. : . : . : . : . : . :
rJMSF027I18+ TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
rJMSF037L12+ TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
rJMSF045F04+ TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
                      ____________________________________________________________
consensus TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
 
. : . : . : . : . : . :
rJMSF027I18+ AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
rJMSF037L12+ AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
rJMSF045F04+ AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
                      ____________________________________________________________
consensus AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
 
. : . : . : . : . : . :
rJMSF027I18+ TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATT
rJMSF037L12+ TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATT
rJMSF045F04+ TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATTTGTA
                      ____________________________________________________________
consensus TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATTTGTA