Contig 010079:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P13Sequence260006342 (4)620010079 (2)ref|XP_004235758.1|2e-88PREDICTED: AMSH-like ubiquitin thioesterase 1 [Solanum lycopersicum]
JMSF044P16Sequence766006342 (4)ref|XP_009777131.1|2e-85PREDICTED: AMSH-like ubiquitin thioesterase 1 isoform X2 [Nicotiana sylvestris]598010079 (2)ref|XP_004235758.1|2e-70PREDICTED: AMSH-like ubiquitin thioesterase 1 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF001P13+                                                                 TTCTA
                      ____________________________________________________________
consensus                                                                    TTCTA
 
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rJMSF001P13+          TATCACGGCTCTTATCATCCCTAAACAAGAATCAACATCAGATTCATGTCAAACTACGAA
                      ____________________________________________________________
consensus             TATCACGGCTCTTATCATCCCTAAACAAGAATCAACATCAGATTCATGTCAAACTACGAA
 
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rJMSF001P13+          TGAGGAGGAAATATTTGAAGTGCAGGATAAGAGATCGCTTTTTCCTCTGGGTTGGATTCA
rJMSF044P16+            AGGAGGAAATATTTGAAGTGCAGGATAAGAGATCGCTTTTTCCTCTGGGTTGGATTCA
                      ____________________________________________________________
consensus             TGAGGAGGAAATATTTGAAGTGCAGGATAAGAGATCGCTTTTTCCTCTGGGTTGGATTCA
 
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rJMSF001P13+          TACACATCCCACACAATCGTGTTTCATGTCATCAATTGATGTGCACACCCAGTACTCGTA
rJMSF044P16+          TACACATCCCACACAATCGTGTTTCATGTCATCAATTGATGTGCACACCCAGTACTCGTA
                      ____________________________________________________________
consensus             TACACATCCCACACAATCGTGTTTCATGTCATCAATTGATGTGCACACCCAGTACTCGTA
 
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rJMSF001P13+          TCAGGTAATGTTACCAGAAGCTATTGCTATTGTCATGGCACCAAAAGATTGCTCGAGAAA
rJMSF044P16+          TCAGGTAATGTTACCAGAAGCTATTGCTATTGTCATGGCACCAAAAGATTGCTCGAGAAA
                      ____________________________________________________________
consensus             TCAGGTAATGTTACCAGAAGCTATTGCTATTGTCATGGCACCAAAAGATTGCTCGAGAAA
 
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rJMSF001P13+          CCATGGAATTTTCCGGTTGACAAATCCTGGTGGTATGACAGTAATCAGACAATGCCCAAG
rJMSF044P16+          CCATGGAATTTTCCGGTTGACAAATCCTGGTGGTATGACAGTAATCAGACAATGCCCAAG
                      ____________________________________________________________
consensus             CCATGGAATTTTCCGGTTGACAAATCCTGGTGGTATGACAGTAATCAGACAATGCCCAAG
 
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rJMSF001P13+          ACGCGGGTTTCATGCCCATGATCCCCCTGCGGATGGTAGCCCAATTTATAAACACTGTAC
rJMSF044P16+          ACGCGGGTTTCATGCCCATGATCCCCCTGCGGATGGTAGCCCAATTTATAAACACTGTAC
                      ____________________________________________________________
consensus             ACGCGGGTTTCATGCCCATGATCCCCCTGCGGATGGTAGCCCAATTTATAAACACTGTAC
 
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rJMSF001P13+          AGATGTTTATATGAGCTCTACATTGAAGTTTGATGTTATTGATCTTCGGTGATATGCAAA
rJMSF044P16+          AGATGTTTATATGAGCTCTACATTGAAGTTTGATGTTATTGATCTTCGGTGATATGCAAA
                      ____________________________________________________________
consensus             AGATGTTTATATGAGCTCTACATTGAAGTTTGATGTTATTGATCTTCGGTGATATGCAAA
 
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rJMSF001P13+          TCTCATAAAATGATCATTAATTTGAGAAAATACGGGTCGGGACTGGTTGGTGTTCTATGT
rJMSF044P16+          TCTCATAAAATGATCATTAATTTGAGAAAATACGGGTCGGGACTGGTTGGTGTTCTATGT
                      ____________________________________________________________
consensus             TCTCATAAAATGATCATTAATTTGAGAAAATACGGGTCGGGACTGGTTGGTGTTCTATGT
 
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rJMSF001P13+          AGCGTGAATACTTGGGATGTGTCCTGCATTTTGGAAGAGGATTTCTATGGCTTGTTTGAA
rJMSF044P16+          AGCGTGAATACTTGGGATGTGTCCTGCATTTTGGAAGAGGATTTCTATGGCTTGTTTGAA
                      ____________________________________________________________
consensus             AGCGTGAATACTTGGGATGTGTCCTGCATTTTGGAAGAGGATTTCTATGGCTTGTTTGAA
 
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rJMSF001P13+          TGTCCTTATTGTGGTCTCATATGATGTTTCTTTGTCCCTTACAAGCTTACCAGTCAAATA
rJMSF044P16+          TGTCCTTATTGTGGTCTCATATGATGTTTCTTTGTCCCTTACAAGCTTACCAGTCAAATA
                      ____________________________________________________________
consensus             TGTCCTTATTGTGGTCTCATATGATGTTTCTTTGTCCCTTACAAGCTTACCAGTCAAATA
 
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rJMSF001P13+          ACTTGTATAGATTGA                                             
rJMSF044P16+          ACTTGTATAGATTGACGTTCTTCTCGACATTATTGCTTGTAAGTACACAAATTCAAGTTG
                      ____________________________________________________________
consensus             ACTTGTATAGATTGACGTTCTTCTCGACATTATTGCTTGTAAGTACACAAATTCAAGTTG