| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039J20 | Sequence | 412 | 010076 (6) | ref|XP_009614786.1| | 1e-08 | PREDICTED: protein DCL, chloroplastic-like [Nicotiana tomentosiformis] | 323 | 010076 (6) | ref|XP_004497728.1| | 50.1 | PREDICTED: uncharacterized protein LOC101504695 [Cicer arietinum] |
| JMSF007A18 | Sequence | 235 | 010076 (6) | 751 | 010076 (6) | ref|XP_009587068.1| | 1e-59 | PREDICTED: protein DCL, chloroplastic-like [Nicotiana tomentosiformis] | |||
| JMSF044G02 | Sequence | 645 | 010076 (6) | ref|XP_009587068.1| | 8e-61 | PREDICTED: protein DCL, chloroplastic-like [Nicotiana tomentosiformis] | 842 | 010076 (6) | ref|XP_009587068.1| | 2e-58 | PREDICTED: protein DCL, chloroplastic-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF007A18- GGGTTCTACTTACCAGCAAGCGTTG
JMFF039J20- GTTTTTGGGTTCTACTTACCAGCAAGCGTTG
____________________________________________________________
consensus GTTTTTGGGTTCTACTTACCAGCAAGCGTTG
. : . : . : . : . : . :
JMSF007A18- TAACTGATTTTTGCTCTGTACAGAACGAACATCTATGGCGGAGCAGACACCCGAAGTCCC
JMFF039J20- TAACTGATTTTTGCTCTGTACAGAACGAACATCTATGGCGGAGCAGACACCCGAAGTCCC
JMSF044G02- GTACAGAACGAACATCTATGGCGGAGCAGACACCCGAAGTCCC
rJMSF044G02+ CC
____________________________________________________________
consensus TAACTGATTTTTGCTCTGTACAGAACGAACATCTATGGCGGAGCAGACACCCGAAGTCCC
. : . : . : . : . : . :
JMSF007A18- CGATACAGTTGCAGAGAAAGCCTCATCCGAGAA-CATGGATGTCGAAACGAACTCTCCAG
JMFF039J20- CGATACAGTTGCAGAGAAAGCCTCATCCGAGAA-CATGGATGTCGAAACGAACTCTCCAG
JMSF044G02- CGATACAGTTGCAGAGAAAGCCTCATCCGAGAA-CATGGATGTCGAAACGAACTCTCCAG
rJMSF007A18+ TCATCCGAGAA-CATGGATGTCGAAACGAACTCTCCAG
rJMSF044G02+ CGATACAGTTGCAGAGAAAGCCTCATCCGAGAACCATGGATGTCGAAACGAACTCTCCAG
____________________________________________________________
consensus CGATACAGTTGCAGAGAAAGCCTCATCCGAGAA-CATGGATGTCGAAACGAACTCTCCAG
. : . : . : . : . : . :
JMSF007A18- AGGACTTGGCGGCTGAGAACGGCGGCGCCGCGAAGCGGCCTAGGGAGGAGGGCGATGAGC
JMFF039J20- AGGACTTGGCGGCTGAGAACGGCGGCGCCGCGAAGCGGCCTAGGGAGGAGGGCGATGAGC
JMSF044G02- AGGACTTGGCGGCTGAGAACGGCGGCGCCGCGAAGCGGCCTAGGGAGGAGGGCGATGAGC
rJMSF007A18+ AGGACTTGGCGGCTGAGAACGGCGGCGCCGCGAAGCGGCCTAGGGAGGAGGGCGATGAGC
rJMSF044G02+ AGGACTTGGCGGCTGAGAACGGCGGCGCCGCGAAGCGGCCTAGGGAGGAGGGCGATGAGC
____________________________________________________________
consensus AGGACTTGGCGGCTGAGAACGGCGGCGCCGCGAAGCGGCCTAGGGAGGAGGGCGATGAGC
. : . : . : . : . : . :
JMSF007A18- CGGATAATGATGACNACGGTGATGCGTCGA
JMFF039J20- CGGATAATGATGACAACGGTGATGCGTCGAAGAAGACGAAGGTCCAGAATCCCGAGGAAG
JMSF044G02- CGGATAATGATGACAACGGTGATGCGTCGAAGAAGACGAAGGTCCAGAATCCCGAGGAAG
rJMSF007A18+ CGGATAATGATGACAACGGTGATGCGTCGAAGAAGACGAAAGTCCAGAATCCCGAGGAAG
rJMSF044G02+ CGGATAATGATGACAACGGTGATGCGTCGAAGAAGACGAAGGTCCAGAATCCCGAGGAAG
____________________________________________________________
consensus CGGATAATGATGACAACGGTGATGCGTCGAAGAAGACGAAGGTCCAGAATCCCGAGGAAG
. : . : . : . : . : . :
JMFF039J20- AGCAAAAAGTTGAAACTTTGGAAGGAAAAGAAAGTGCTGCGGAAGGAGAGAAGAAAGAGG
JMSF044G02- AGCAAAAAGTTGAAACTTTGGAAGGAAAAGAAAGTGCTGCGGAAGGAGAGAAGAAAGAGG
rJMSF007A18+ AGCAAAAAGTTGAAACTTTGGAAGGAAAAGAAAGTGCTGCGGAAGGAGAGAAGAAAGAGG
rJMSF044G02+ AGCAAAAAGTTGAAACTTTGGAAGGAAAAGAAAGTGCTGCGGAAGGAGAGAAGAAAGAGG
____________________________________________________________
consensus AGCAAAAAGTTGAAACTTTGGAAGGAAAAGAAAGTGCTGCGGAAGGAGAGAAGAAAGAGG
. : . : . : . : . : . :
JMFF039J20- ATAAATCGGGTCCAGTCACCTTGGGTCCGAAGACATTCGTGTCATCGGTTGAGATGTTTG
JMSF044G02- ATAAATCGGGTCCAGTCACCTTGGGTCCGAAGACATTCGTGTCATCGGTTGAGATGTTTG
rJMSF007A18+ ATAAATCGGGTCCAGTCACCTTGGGTCCGAAGACATTCGTGTCATCGGTTGAGATGTTTG
rJMSF044G02+ ATAAATCGGGTCCAGTCACCTTGGGTCCGAAGACATTCGTGTCATCGGTTGAGATGTTTG
____________________________________________________________
consensus ATAAATCGGGTCCAGTCACCTTGGGTCCGAAGACATTCGTGTCATCGGTTGAGATGTTTG
. : . : . : . : . : . :
JMFF039J20- ATTATTTCTATNAGCTTCTTCA
JMSF044G02- ATTATTTCTATAAGCTTCTTCATTCCTGGTCTACCAATCTCAATGTTAACAAGTATGAAC
rJMSF007A18+ ATTATTTCTATAAGCTTCTTCATTCCTGGTCTACCAATCTCAATGTTAACAAGTATGAAC
rJMSF044G02+ ATTATTTCTATAAGCTTCTTCATTCCTGGTCTACCAATCTCAATGTTAACAAGTATGAAC
____________________________________________________________
consensus ATTATTTCTATAAGCTTCTTCATTCCTGGTCTACCAATCTCAATGTTAACAAGTATGAAC
. : . : . : . : . : . :
JMSF044G02- ACCTGGTGTTGCTGGAGTTGCTAAACAAGGGCCATCCAGAGCCGGAGAAGAAGATAGGCA
rJMSF007A18+ ACCTGGTGTTGCTGGAGTTGCTAAACAAGGGCCATCCAGAGCCGGAGAAGAAGATAGGCA
rJMSF044G02+ ACCTGGTGTTGCTGGAGTTGCTAAACAAGGGCCATCCAGAGCCGGAGAAGAAGATAGGCA
____________________________________________________________
consensus ACCTGGTGTTGCTGGAGTTGCTAAACAAGGGCCATCCAGAGCCGGAGAAGAAGATAGGCA
. : . : . : . : . : . :
JMSF044G02- AAGGAGTCGGTGGATTTCAAGTTCGGTTCCACCCAAAGTACAAAAGTCGCTGCTTCTTCA
rJMSF007A18+ AAGGAGTCGGTGGATTTCAAGTTCGGTTCCACCCAAAGTACAAAAGTCGCTGCTTCTTCA
rJMFF039J20+ CTTCTTCA
rJMSF044G02+ AAGGAGTCGGTGGATTTCAAGTTCGGTTCCACCCAAAGTACAAAAGTCGCTGCTTCTTCA
____________________________________________________________
consensus AAGGAGTCGGTGGATTTCAAGTTCGGTTCCACCCAAAGTACAAAAGTCGCTGCTTCTTCA
. : . : . : . : . : . :
JMSF044G02- TCACAGGGGAAGACGGTTCTTCAGATGATTTTAGCTTCAGGAAGTGCGTGGACAACATTC
rJMSF007A18+ TCACAGGGGAAGACGGTTCTTCAGATGATTTTAGCTTCAGGAAGTGCGTGGACAACATTC
rJMFF039J20+ TCACAGGGGAAGNNGGTTCTTCAGATGATTTTAGNTTCAGGAAGTGCGTGGACAACATTA
rJMSF044G02+ TCACAGGGGAAGACGGTTCTTCAGATGATTTTAGCTTCAGGAAGTGCGTGGACAACATTC
____________________________________________________________
consensus TCACAGGGGAAGACGGTTCTTCAGATGATTTTAGCTTCAGGAAGTGCGTGGACAACATTC
. : . : . : . : . : . :
JMSF044G02- TTCCCCTCCCGGAGAACATGCCAATAAAACACGATACGTATAGGGGCGAGCGTGGTGGCA
rJMSF007A18+ TTCCCCTCCCGGAGAACATGCCAATAAAACACGATACGTATAGGGGCGAGCGTGGTGGCA
rJMFF039J20+ TTCCCCTCCCGGAGANCATGCCAATAAAACNCGATACGTATAGGGGCGAGCGTGNTGGCA
rJMSF044G02+ TTCCCCTCCCGGAGAACATGCCAATAAAACACGATACGTATAGGGGCGAGCGTGGTGGCA
____________________________________________________________
consensus TTCCCCTCCCGGAGAACATGCCAATAAAACACGATACGTATAGGGGCGAGCGTGGTGGCA
. : . : . : . : . : . :
JMSF044G02- GA
rJMSF007A18+ GAGGAGGAGGAAGATGGGGTGGCCGTGGTCGTGGGCATGGCAGAGGAAGGTTCAGAAACT
rJMFF039J20+ GAGGAGGAGGAAGATGGGGTGGCCGTGGTCGTGGGCATGGCAGAGGAAGGTTCAGAAACT
rJMSF044G02+ GAGGAGGAGGAAGATGGGGTGGCCGTGGTCGTGGGCATGGCAGAGGAAGGTTCAGAAACT
____________________________________________________________
consensus GAGGAGGAGGAAGATGGGGTGGCCGTGGTCGTGGGCATGGCAGAGGAAGGTTCAGAAACT
. : . : . : . : . : . :
rJMSF007A18+ GAATGGTCTGCTCTTTCCCTGGACATGAAGGGCATATCATTTGCAGAAGAAAACTTTATA
rJMFF039J20+ GAATGGTCTACTCTTTCCCTGGACATGAAGGGCATATCATTTGCAGAAGAAAACTTTATA
rJMSF044G02+ GAATGGTCTGCTCTTTCCCTGGACATGAAGGGCATATCATTTGCAGAAGAAAACTTTATA
____________________________________________________________
consensus GAATGGTCTGCTCTTTCCCTGGACATGAAGGGCATATCATTTGCAGAAGAAAACTTTATA
. : . : . : . : . : . :
rJMSF007A18+ CTTCCTAGTATCTATAAGTTCACGTAGCATGAGTTATTATTACCATTGTGCACT
rJMFF039J20+ CTTCCTAGTATCTATAAGTTCACGTAGCATGAGTTATTATTACCATTGTGCACTTTTTTT
rJMSF044G02+ CTTCCTAGTATCTATAAGTTCACGTAGCATGAGTTATTATTACCATTGTGCACTTTTTTT
____________________________________________________________
consensus CTTCCTAGTATCTATAAGTTCACGTAGCATGAGTTATTATTACCATTGTGCACTTTTTTT
. : . : . : . : . : . :
rJMFF039J20+ GTCTAGTCGAATCTC
rJMSF044G02+ GTCTAGTCGAATCTCGATCGAATTTATCATTGAATGCAACTTTGTTTTTGCTAGAAAGCC
____________________________________________________________
consensus GTCTAGTCGAATCTCGATCGAATTTATCATTGAATGCAACTTTGTTTTTGCTAGAAAGCC