Contig 010073:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036B11Sequence659006684 (3)ref|XP_011044648.1|1e-27PREDICTED: starch synthase 1, chloroplastic/amyloplastic isoform X2 [Populus eu733010073 (3)emb|CDP05054.1|1e-69unnamed protein product [Coffea canephora]
JMSF043P11Sequence716006684 (3)ref|XP_006350536.1|5e-38PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X602010073 (3)emb|CDP05054.1|6e-52unnamed protein product [Coffea canephora]
JMSF049E06Sequence668006684 (3)ref|XP_006350536.1|3e-29PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X760010073 (3)ref|XP_009624828.1|3e-98PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic isoform X4 [Ni

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049E06+ AACTAATGAATGATGATGTCCAATTTGTAATGCTTGGGTCCGGTGA
                      ____________________________________________________________
consensus AACTAATGAATGATGATGTCCAATTTGTAATGCTTGGGTCCGGTGA
 
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rJMSF049E06+ GAAACAGTACGAGGACTGGATGAGATATATGGAGTCACAATATCAAGATAAGTTCCGAGG
rJMSF036B11+ CAGTACGAGGACTGGATGAGATATATGGAGTCACAATATCAAGATAAGTTCCGAGG
                      ____________________________________________________________
consensus GAAACAGTACGAGGACTGGATGAGATATATGGAGTCACAATATCAAGATAAGTTCCGAGG
 
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rJMSF049E06+ ATGGGTTGGATTCAACGTGCCTATTTCGCATAGGATAACAGC-GGGCTGTGACATCCTAT
rJMSF036B11+ ATGGGTTGGATTCAACGTGCCTATTTCGCATAGGATAACAGCGGGGCTGTGACATCCTAT
rJMSF043P11+ AT
                      ____________________________________________________________
consensus ATGGGTTGGATTCAACGTGCCTATTTCGCATAGGATAACAGCGGGGCTGTGACATCCTAT
 
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rJMSF049E06+ TAATGCCTTCGAGATTTGAACCGTGTGGCTT-AAACCAGTTGTACGCGATGAGATATGGC
rJMSF036B11+ TAATGCCTTCGAGATTTGAACCGTGTGGCTT-AAACCAGTTGTACGCGATGAGATATGGC
rJMSF043P11+ TAATGCCTTCGAGATTTGAACCGTGTGGCTTNAAACCAGTTGTACGCGATGAGATATGGC
                      ____________________________________________________________
consensus TAATGCCTTCGAGATTTGAACCGTGTGGCTT-AAACCAGTTGTACGCGATGAGATATGGC
 
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rJMSF049E06+ ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
rJMSF036B11+ ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
rJMSF043P11+ ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
                      ____________________________________________________________
consensus ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
 
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rJMSF049E06+ TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
rJMSF036B11+ TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
rJMSF043P11+ TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
                      ____________________________________________________________
consensus TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
 
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rJMSF049E06+ AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
rJMSF036B11+ AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
rJMSF043P11+ AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
                      ____________________________________________________________
consensus AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
 
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rJMSF049E06+ AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
rJMSF036B11+ AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
rJMSF043P11+ AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
                      ____________________________________________________________
consensus AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
 
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rJMSF049E06+ TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
rJMSF036B11+ TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
rJMSF043P11+ TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
                      ____________________________________________________________
consensus TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
 
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rJMSF049E06+ AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
rJMSF036B11+ AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
rJMSF043P11+ AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
                      ____________________________________________________________
consensus AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
 
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rJMSF049E06+ TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
rJMSF036B11+ TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
rJMSF043P11+ TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
                      ____________________________________________________________
consensus TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
 
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rJMSF049E06+ TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
rJMSF036B11+ TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
rJMSF043P11+ TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
                      ____________________________________________________________
consensus TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
 
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rJMSF049E06+ GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAAT
rJMSF036B11+ GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAAT
rJMSF043P11+ GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAATTGTAAAAACCATCAT
                      ____________________________________________________________
consensus GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAATTGTAAAAACCATCAT