clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF001L20 | Sequence | 217 | 010068 (4) | ||||||||
JMSF002E04 | Sequence | 344 | 016669 | gb|EYU33195.1| | 4e-61 | hypothetical protein MIMGU_mgv1a002911mg [Erythranthe guttata] | 714 | 010068 (4) | ref|XP_009764849.1| | 7e-55 | PREDICTED: ankyrin repeat-containing protein At3g12360-like [Nicotiana sylvestr |
JMSF034G01 | Sequence | 730 | 002343 (2) | ref|XP_009600985.1| | 1e-82 | PREDICTED: ankyrin repeat-containing protein At3g12360-like [Nicotiana tomentos | 755 | 010068 (4) | ref|XP_009600985.1| | 1e-52 | PREDICTED: ankyrin repeat-containing protein At3g12360-like [Nicotiana tomentos |
JMSF043A14 | Sequence | 485 | 002343 (2) | ref|XP_004239763.1| | 2e-40 | PREDICTED: ankyrin repeat-containing protein At3g12360 [Solanum lycopersicum] | 637 | 010068 (4) | emb|CDP21519.1| | 3e-17 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF002E04+ GGCGAGACAAAGGCTGAAAGGAGAGTGATAGAGATTATAANCAAGTTGAT
rJMSF034G01+ GGCTGAAAGGAGAGTGATAGAGATTATAAACAAGTTGAT
____________________________________________________________
consensus GGCGAGACAAAGGCTGAAAGGAGAGTGATAGAGATTATAAACAAGTTGAT
. : . : . : . : . : . :
rJMSF002E04+ GTGGCTGGCTTCTGTGTGTACTTCAGTAGCATTCATGGCCTCGTCTTATATAGTGGTTGG
rJMSF034G01+ GTGGCTGGCTTCTGTGTGTACTTCAGTAGCATTCATGGCCTCGTCTTATATAGTGGTTGG
____________________________________________________________
consensus GTGGCTGGCTTCTGTGTGTACTTCAGTAGCATTCATGGCCTCGTCTTATATAGTGGTTGG
. : . : . : . : . : . :
rJMSF002E04+ GCGCAAATTTGAGTGGGCTGCTATCTTGGTTACGGTTGTAGGTGGCAGTATAATGG-CCG
rJMSF034G01+ GCGCAAATTTGAGTGGGCTGCTATCTTGGTTACGGTTGTAGGTGGCAGTATAATGG-CCG
rJMSF043A14+ GGTTACGGTTGTAGGTGGCAGTATAATGGCCCG
____________________________________________________________
consensus GCGCAAATTTGAGTGGGCTGCTATCTTGGTTACGGTTGTAGGTGGCAGTATAATGG-CCG
. : . : . : . : . : . :
rJMSF002E04+ GGGTTCTTGGAACCATGACATATTATGTTGTGAGGTCTAGGAGAATCAGGTCGACGAGGA
rJMSF034G01+ GGGTTCTTGGAACCATGACATATTATGTTGTGAGGTCTAGGAGAATCAGGTCGACGAGGA
rJMSF043A14+ GGGTTCTTGGAACCATGACATATTATGTTGTGAGGTCTAGGAGAATCAGGTCGACGAGGA
____________________________________________________________
consensus GGGTTCTTGGAACCATGACATATTATGTTGTGAGGTCTAGGAGAATCAGGTCGACGAGGA
. : . : . : . : . : . :
rJMSF001L20+ TCTAACT
rJMSF002E04+ AAAAAGAGAAGCACGCAAGGAGTGGCTCCAACTCATGGCTTCCCTCTGAGTTGTCTAACT
rJMSF034G01+ AAAAAGAGAAGCACGCAAGGAGTGGCTCCAACTCATGGCTTCCCTCTGAGTTGTCTAACT
rJMSF043A14+ AAAAAGAGAAGCACGCAAGGAGTGGCTCCAACTCATGGCTTCCCTCTGAGTTGTCTAACT
____________________________________________________________
consensus AAAAAGAGAAGCACGCAAGGAGTGGCTCCAACTCATGGCTTCCCTCTGAGTTGTCTAACT
. : . : . : . : . : . :
rJMSF001L20+ CAGATATNGACAGGATTTACGCCATCTGATNTGNGAAGCTCAAGANGAAGAGGGACTTAT
rJMSF002E04+ CAGATATTGACAGGATTTATGCCATCTGATCTGAGAAGCTCAAGATGAAGAGGGACTTAT
rJMSF034G01+ CAGATATTGACAGGATTTATGCCATCTGATCTGAGAAGCTCAAGATGAAGAGGGACTTAT
rJMSF043A14+ CAGATATTGACAGGATTTATGCCATCTGATCTGAGAAGCTCAAGATGAAGAGGGACTTAT
____________________________________________________________
consensus CAGATATTGACAGGATTTATGCCATCTGATCTGAGAAGCTCAAGATGAAGAGGGACTTAT
. : . : . : . : . : . :
rJMSF001L20+ TGGCAACAATTGAAGTAAAATCATAGGAATTTAAGAATGTGTTCNGTCTCANNTAAAAGT
rJMSF002E04+ TGGCAACAATTGAAGTAAAATCATAGGAATTTAAGAATGTGTTCTGTCTCAACTAAAAGT
rJMSF034G01+ TGGCAACAATTGAAGTAAAATCATAGGAATTTAAGAATGTGTTCTGTCTCAACTAAAAGT
rJMSF043A14+ TGGCAACAATTGAAGTAAAATCATAGGAATTTAAGAATGTGTTCTGTCTCAACTAAAAGT
____________________________________________________________
consensus TGGCAACAATTGAAGTAAAATCATAGGAATTTAAGAATGTGTTCTGTCTCAACTAAAAGT
. : . : . : . : . : . :
rJMSF001L20+ NTTNACTGTTAGNGAGGNTNCACANNTATNTNTNATATATNATATGCTCGAANATAGAGA
rJMSF002E04+ CTTAACTGTTAGTGAGGCTACACATTTATATTTTATATATTATATGCTCGAAAATAGAGA
rJMSF034G01+ CTTAACTGTTAGTGAGGCTACACATTTATATTTTATATATTATATGCTCGAAAATAGAGA
rJMSF043A14+ CTTAACTGTTAGTGAGGCTACACATTTATATTTTATATATTATATGCTCGAAAATAGAGA
____________________________________________________________
consensus CTTAACTGTTAGTGAGGCTACACATTTATATTTTATATATTATATGCTCGAAAATAGAGA
. : . : . : . : . : . :
rJMSF001L20+ GGGAAACATGAAGGATCCACC
rJMSF002E04+ GGGAAACATGAAGGATCCACCCTCCTCCTCGGCTTTTCTGATCAATTAGCCCATAACATG
rJMSF034G01+ GGGAAACATGAAGGATCCACCCTCCTCCTCGGCTTTTCTGATCAATTAGCCCATAACATG
rJMSF043A14+ GGGAAACATGAAGGATCCACCCTCCTCCTCGGCTTTTCTGATCAATTAGCCCATAACATG
____________________________________________________________
consensus GGGAAACATGAAGGATCCACCCTCCTCCTCGGCTTTTCTGATCAATTAGCCCATAACATG
. : . : . : . : . : . :
rJMSF002E04+ TTTAGCGGCTTCCTGTTTGGTGGAATGGAGGAGATGATCAGTTGTTGCTTTCTGTTAACT
rJMSF034G01+ TTTAGCGGCTTCCTGTTTGGTGGAATGGAGGAGATGATCAGTTGTTGCTTTCTGTTAACT
rJMSF043A14+ TTTAGCGGCTTCCTGTTTGGTGGAATGGAGGAGATGATCAGTTGTTGCTTTCTGTTAACT
____________________________________________________________
consensus TTTAGCGGCTTCCTGTTTGGTGGAATGGAGGAGATGATCAGTTGTTGCTTTCTGTTAACT
. : . : . : . : . : . :
rJMSF002E04+ CTTCTAATTTCAGAGGATTTCCTTGAGAACCTGCACCCAGGAGGCAGGAATGAAACATAT
rJMSF034G01+ CTTCTAATTTCAGAGGATTTCCTTGAGAACCTGCACCCAGGAGGCAGGAATGAAACATAT
rJMSF043A14+ CTTCTAATTTCAGAGGATTTCCTTGAGAACCTGCACCCAGGAGGCAGGAATGAAACATAT
____________________________________________________________
consensus CTTCTAATTTCAGAGGATTTCCTTGAGAACCTGCACCCAGGAGGCAGGAATGAAACATAT
. : . : . : . : . : . :
rJMSF002E04+ TGTCAGATTAGCTAATATTTACTGTCAAGTTACAGACTTGGAAAATATGTATATTTTGTT
rJMSF034G01+ TGTCAGATTAGCTAATATTTACTGTCAAGTTACAGACTTGGAAAATATGTATATTTTGTT
rJMSF043A14+ TGTCAGATTAGCTAATATTTACTGTCAAGTTACAGACTTGGAAAATATGTATATTTTGTT
____________________________________________________________
consensus TGTCAGATTAGCTAATATTTACTGTCAAGTTACAGACTTGGAAAATATGTATATTTTGTT
. : . : . : . : . : . :
rJMSF034G01+ TGAAATCATGGTCTCATGAATGCAATTCTACCTT
rJMSF043A14+ TGAAATCATGGTCTCATGAATGCAATTCTACCTTTGAAATGAGGATTGTGTAAAAATGCA
____________________________________________________________
consensus TGAAATCATGGTCTCATGAATGCAATTCTACCTTTGAAATGAGGATTGTGTAAAAATGCA