Contig 010055:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004L18Sequence388010803 (5)ref|XP_009783617.1|4e-36PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]155010055 (3)emb|CDP01562.1|1e-15unnamed protein product [Coffea canephora]
JMSF035E21Sequence669010803 (5)ref|XP_009783617.1|8e-93PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]665010055 (3)ref|XP_006353172.1|8e-113PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Solanum tuberosum
JMSF040H04Sequence648010803 (5)ref|XP_009783617.1|7e-98PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]863010055 (3)ref|XP_009783617.1|7e-149PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF040H04+                                               TCCTAGTAATGTTGATGAGCTTG
                      ____________________________________________________________
consensus                                                  TCCTAGTAATGTTGATGAGCTTG
 
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rJMSF040H04+          GTGCTAACTACCTTGGAGAGAAGGATAAAGAGAACAAAGGAGCGGGGAAGTTTGTAGCCA
                      ____________________________________________________________
consensus             GTGCTAACTACCTTGGAGAGAAGGATAAAGAGAACAAAGGAGCGGGGAAGTTTGTAGCCA
 
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rJMSF040H04+          TTCACCTACGCTTTGATAAGGACATGGCTGCTCATTCAGCTTGTGATTTTGGTGGAGGTA
                      ____________________________________________________________
consensus             TTCACCTACGCTTTGATAAGGACATGGCTGCTCATTCAGCTTGTGATTTTGGTGGAGGTA
 
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rJMSF035E21+                                                               GTCCTAA
rJMSF040H04+          AGGCTGAGAAGTTATCTCTAGCTAAGTATCGGCAGAGGATTTGGCAGGGAAGGGTCCTAA
                      ____________________________________________________________
consensus             AGGCTGAGAAGTTATCTCTAGCTAAGTATCGGCAGAGGATTTGGCAGGGAAGGGTCCTAA
 
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rJMSF035E21+          ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
rJMSF040H04+          ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
                      ____________________________________________________________
consensus             ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
 
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rJMSF035E21+          AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
rJMSF040H04+          AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
                      ____________________________________________________________
consensus             AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
 
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rJMSF035E21+          CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
rJMSF040H04+          CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
                      ____________________________________________________________
consensus             CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
 
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rJMSF035E21+          TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
rJMSF040H04+          TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
                      ____________________________________________________________
consensus             TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
 
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rJMSF035E21+          CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
rJMSF040H04+          CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
                      ____________________________________________________________
consensus             CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
 
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rJMSF004L18+                                          CATAGAACTTAGTATAATTCAAAGNCGA
rJMSF035E21+          CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
rJMSF040H04+          CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
                      ____________________________________________________________
consensus             CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
 
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rJMSF004L18+          TAAGGCCCAACATGCANCTGGTAGGTCANCTNTTCNTAAACAAAAACCTGGGCTGGCCGG
rJMSF035E21+          TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
rJMSF040H04+          TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
                      ____________________________________________________________
consensus             TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
 
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rJMSF004L18+          AGTTCAAAGAGGCGGNGGTTGAAGGGCATNCAAACCGACAAGGGCNGATCAGACTTCGCA
rJMSF035E21+          AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
rJMSF040H04+          AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
                      ____________________________________________________________
consensus             AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
 
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rJMSF004L18+          AA                                                          
rJMSF035E21+          AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
rJMSF040H04+          AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
                      ____________________________________________________________
consensus             AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
 
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rJMSF035E21+          ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
rJMSF040H04+          ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
                      ____________________________________________________________
consensus             ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
 
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rJMSF035E21+          GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACC  
rJMSF040H04+          GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACCAC
                      ____________________________________________________________
consensus             GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACCAC