Contig 010050:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047P17Sequence643002383 (3)ref|XP_009611354.1|4e-73PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Nicotiana tomentosiform608010050 (3)ref|XP_009781258.1|3e-65PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Nicotiana sylvestris]
JMSF039M15Sequence639002383 (3)ref|XP_009611354.1|4e-67PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Nicotiana tomentosiform856010050 (3)ref|XP_009781258.1|1e-92PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Nicotiana sylvestris]
JMSF039P06Sequence642002383 (3)ref|XP_009611354.1|1e-75PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Nicotiana tomentosiform821010050 (3)ref|XP_009781258.1|4e-94PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF039M15+                                                      ATTTAATGGTGAAATC
                      ____________________________________________________________
consensus                                                         ATTTAATGGTGAAATC
 
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rJMSF039P06+                              CCCGAAATATTTTAAACCGTGCAAAGAAGCCTCCTCAAGT
rJMSF039M15+          TTGAAATGGGCCAATGAGACCCCGAAATATTTTAANCCGTGCAAAGAAGCCTCCTCAAGT
                      ____________________________________________________________
consensus             TTGAAATGGGCCAATGAGACCCCGAAATATTTTAAACCGTGCAAAGAAGCCTCCTCAAGT
 
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rJMSF039P06+          CAAATTTTATAATATCTATGGGACTAACTATGATACACCACATACTGTCAGTTATGGAAG
rJMSF039M15+          CAAATTTTATAATATCTATGGGACTAACTATGATACACCACATACTGTCAGTTATGGAAG
                      ____________________________________________________________
consensus             CAAATTTTATAATATCTATGGGACTAACTATGATACACCACATACTGTCAGTTATGGAAG
 
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rJMFF047P17+                                                                  TATA
rJMSF039P06+          TGCAGATAAACCTGTCTCAGATTTAAAGCAGCTACCTTTTGTAACGGCTGATTTCATATA
rJMSF039M15+          TGCAGATAAACCTGTCTCAGATTTAAAGCAGCTACCTTTTGTAACGGCTGATTTCATATA
                      ____________________________________________________________
consensus             TGCAGATAAACCTGTCTCAGATTTAAAGCAGCTACCTTTTGTAACGGCTGATTTCATATA
 
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rJMFF047P17+          TGTTGATGGTGATGGAACAGTTCCAACAGAATCTGCAAAGGCAGATGGGCTTAATGCAGA
rJMSF039P06+          TGTTGATGGTGATGGAACAGTTCCAACAGAATCTGCAAAGGCAGATGGGCTTAATGCAGA
rJMSF039M15+          TGTTGATGGTGATGGAACAGTTCCAACAGAATCTGCAAAGGCAGATGGGCTTAATGCAGA
                      ____________________________________________________________
consensus             TGTTGATGGTGATGGAACAGTTCCAACAGAATCTGCAAAGGCAGATGGGCTTAATGCAGA
 
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rJMFF047P17+          AGCAAGGGTTGGAGTCCCTGCAGATCACAGAGGGATCATCTGTGATCGTTATGTTTTTAG
rJMSF039P06+          AGCAAGGGTTGGAGTCCCTGCAGATCACAGAGGGATCATCTGTGATCGTTATGTTTTTAG
rJMSF039M15+          AGCAAGGGTTGGAGTCCCTGCAGATCACAGAGGGATCATCTGTGATCGTTATGTTTTTAG
                      ____________________________________________________________
consensus             AGCAAGGGTTGGAGTCCCTGCAGATCACAGAGGGATCATCTGTGATCGTTATGTTTTTAG
 
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rJMFF047P17+          GGTTATCAAACACTGGCTGAAGGCGGATCACGATCCTTTCTATAATCCCGTTAACGATTA
rJMSF039P06+          GGTTATCAAACACTGGCTGAAGGCGGATCACGATCCTTTCTATAATCCCGTTAACGATTA
rJMSF039M15+          GGTTATCAAACACTGGCTGAAGGCGGATCACGATCCTTTCTATAATCCCGTTAACGATTA
                      ____________________________________________________________
consensus             GGTTATCAAACACTGGCTGAAGGCGGATCACGATCCTTTCTATAATCCCGTTAACGATTA
 
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rJMFF047P17+          TGTTATCCTTCCCACCTTGTTTGACATGGAGAGGCGCCAAGAAAAAGGGTTGGAGATCAC
rJMSF039P06+          TGTTATCCTTCCCACCTTGTTTGACATGGAGAGGCGCCAAGAAAAAGGGTTGGAGATCAC
rJMSF039M15+          TGTTATCCTTCCCACCTTGTTTGACATGGAGAGGCGCCAAGAAAAAGGGTTGGAGATCAC
                      ____________________________________________________________
consensus             TGTTATCCTTCCCACCTTGTTTGACATGGAGAGGCGCCAAGAAAAAGGGTTGGAGATCAC
 
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rJMFF047P17+          TTCCCTCAAGGAGGAATGGGAAATTATATCAGAAGGGGCAGAGTATGTGGCGGATGAAAA
rJMSF039P06+          TTCCCTCAAGGAGGAATGGGAAATTATATCAGAAGGGGCAGAGTATGTGGCGGATGAAAA
rJMSF039M15+          TTCCCTCAAGGAGGAATGGGAAATTATATCAGAAGGGGCAGAGTATGTGGCGGATGAAAA
                      ____________________________________________________________
consensus             TTCCCTCAAGGAGGAATGGGAAATTATATCAGAAGGGGCAGAGTATGTGGCGGATGAAAA
 
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rJMFF047P17+          GCCGATTGTGGGTTCTATTTGTGTTTCTCGTGTCGGGGAAGACAATGTTTCACGGGAAGA
rJMSF039P06+          GCCGATTGTGGGTTCTATTTGTGTTTCTCGTGTCGGGGAAGACAATGTTTCACGGGAAGA
rJMSF039M15+          GCCGATTGTGGGTTCTATTTGTGTTTCTCGTGTCGGGGAAGACAATGTTTCACGGGAAGA
                      ____________________________________________________________
consensus             GCCGATTGTGGGTTCTATTTGTGTTTCTCGTGTCGGGGAAGACAATGTTTCACGGGAAGA
 
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rJMFF047P17+          TGCTCAAGCCACTGTGGTTGTTCACCCTGCGCTCGATGGTAAGAAATGCCATGTTGAACT
rJMSF039P06+          TGCTCAAGCCACTGTGGTTGTTCACCCTGCGCTCGATGGTAAGAAATGCCATGTTGAACT
rJMSF039M15+          TGCTCAAGCCACTGTGGTTGTTCACCCTGCGCTCGATGGTAAGAAATGCCATGTTGAACT
                      ____________________________________________________________
consensus             TGCTCAAGCCACTGTGGTTGTTCACCCTGCGCTCGATGGTAAGAAATGCCATGTTGAACT
 
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rJMFF047P17+          TAGTGCCATGTCTGTCTCGACGAATGTATAAATTTTAGCTGCCGATTCATATTCATCGTG
rJMSF039P06+          TAGTGCCATGTCTGTCTCGACGAATGTATAAATTTTAGCTGCCGATTCATATTCATCGTG
rJMSF039M15+          TAGTGCCATGTCTGTCTCGACGAATGTATAAATTTTAGCTGCCGATTCATATTCATCGTG
                      ____________________________________________________________
consensus             TAGTGCCATGTCTGTCTCGACGAATGTATAAATTTTAGCTGCCGATTCATATTCATCGTG
 
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rJMFF047P17+          GAAGTGGTATTGATGTGTGTTGGGCTGACTTTATTTATATATATATATATTTCTGTATAT
rJMSF039P06+          GAAGTGGTATTGATGTGTGTTGGGCTGACTTTATTTATATATATATATATTTCTGTATAT
rJMSF039M15+          GAAGTGGTATTGATGTGTGTTGGGCTGACTTTATTTATATATATATATATTTCTGTATAT
                      ____________________________________________________________
consensus             GAAGTGGTATTGATGTGTGTTGGGCTGACTTTATTTATATATATATATATTTCTGTATAT
 
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rJMFF047P17+          ATTGCAAGATGGTTATGGAACTCTAATCCTCTTGTGTTATACAAGCTATGTTATTT    
rJMSF039P06+          ATTGCAAGATGGTTATGGAACTCTAATCCTCTTGTGTTATACAAGCTATGTTATTTTAGA
rJMSF039M15+          ATTGCAAGATGGTTATGGAACTCTAATCCTCTTGTGTTATACAAGCTATGTTATTTTAGA
                      ____________________________________________________________
consensus             ATTGCAAGATGGTTATGGAACTCTAATCCTCTTGTGTTATACAAGCTATGTTATTTTAGA
 
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rJMSF039P06+          ATGTATTTGTACATATTTAAGTTGTGTATATCCTTCACATGTAAATATCCCAT       
rJMSF039M15+          ATGTATTTGTACATATTTAAGTTGTGTATATCCTTCACATGTAAATATCCCATTGTATCT
                      ____________________________________________________________
consensus             ATGTATTTGTACATATTTAAGTTGTGTATATCCTTCACATGTAAATATCCCATTGTATCT