| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF029N04 | Sequence | 568 | 003304 (2) | 758 | 010032 (3) | ref|XP_002270435.1| | 9e-34 | PREDICTED: protein KRI1 homolog [Vitis vinifera] ref|XP_010649228.1| PREDICTED: | |||
| JMSF028A03 | Sequence | 432 | 021077 | ref|XP_004142908.1| | 96.7 | PREDICTED: uncharacterized protein LOC101213280 [Cucumis sativus] ref|XP_0041595 | 729 | 010032 (3) | ref|XP_002270435.1| | 2e-26 | PREDICTED: protein KRI1 homolog [Vitis vinifera] ref|XP_010649228.1| PREDICTED: |
| JMSF036F09 | Sequence | 588 | 021123 | ref|XP_009793308.1| | 2e-23 | PREDICTED: protein KRI1 homolog [Nicotiana sylvestris] ref|XP_009793317.1| PREDI | 768 | 010032 (3) | emb|CDP10725.1| | 7e-18 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF029N04+ TGTGATAGGTGACTTAAAGACTAGGTTTAAGTATAA
____________________________________________________________
consensus TGTGATAGGTGACTTAAAGACTAGGTTTAAGTATAA
. : . : . : . : . : . :
rJMFF029N04+ ACCTGTCAATGCTAAAAGATTCGGCTTGAGTACTGAGGAGATGTTAATGTTGGATGACAA
rJMSF028A03+ CCTGTCAATGCTAAAAGATTCGGCTTGAGTACTGAGGAGATGTTAATGTTGGATGACAA
rJMSF036F09+ GCTAAAAGATTCGGCTTGAGTACTGAGGAGATGTTAATGTTGGATGACAA
____________________________________________________________
consensus ACCTGTCAATGCTAAAAGATTCGGCTTGAGTACTGAGGAGATGTTAATGTTGGATGACAA
. : . : . : . : . : . :
rJMFF029N04+ GGAGTTGAAT-CAATATGTACCTCTAAAGACGTTGGCAGCATATCGAGACAAGGATTGGA
rJMSF028A03+ GGAGTTGAAT-CAATATGTACCTCTAAAGACGTTGGCAGCATATCGAGACAAGGATTGGA
rJMSF036F09+ GGAGTTGAATCCAATATGTACCTCTAAAGACGTTGGCAGCATATCGAGACAAGGATTGGA
____________________________________________________________
consensus GGAGTTGAAT-CAATATGTACCTCTAAAGACGTTGGCAGCATATCGAGACAAGGATTGGA
. : . : . : . : . : . :
rJMFF029N04+ AGGTGCCCCGAGCTAAGAGACACCAGCAAAAGCAGAAAATTAAAGAATTAATTCAGGGGA
rJMSF028A03+ AGGTGCCCCGAGCTAAGAGACACCAGCAAAAGCAGAAAATTAAAGAATTAATTCAGGGGA
rJMSF036F09+ AGGTGCCCCGAGCTAAGAGACACCAGCAAAAGCAGAAAATTAAAGAATTAATTCAGGGGA
____________________________________________________________
consensus AGGTGCCCCGAGCTAAGAGACACCAGCAAAAGCAGAAAATTAAAGAATTAATTCAGGGGA
. : . : . : . : . : . :
rJMFF029N04+ AGACACTAGACAACAGGAAGAATGAGAAAAAGAGGCCAAGAGATCAGGAAACTACAATAG
rJMSF028A03+ AGACACTAGACAACAGGAAGAATGAGAAAAAGAGGCCAAGAGATCAGGAAACTACAATAG
rJMSF036F09+ AGACACTAGACAACAGGAAGAATGAGAAAAAGAGGCCAAGAGATCAGGAAACTACAATAG
____________________________________________________________
consensus AGACACTAGACAACAGGAAGAATGAGAAAAAGAGGCCAAGAGATCAGGAAACTACAATAG
. : . : . : . : . : . :
rJMFF029N04+ TGGCAAATTATACGGAAAATGAGAAACCACATTTGGAGGGATCAAATGGCGATACAAGCA
rJMSF028A03+ TGGCAAATTATACGGAAAATGAGAAACCACATTTGGAGGGATCAAATGGCGATACAAGCA
rJMSF036F09+ TGGCAAATTATACGGAAAATGAGAAACCACATTTGGAGGGATCAAATGGCGATACAAGCA
____________________________________________________________
consensus TGGCAAATTATACGGAAAATGAGAAACCACATTTGGAGGGATCAAATGGCGATACAAGCA
. : . : . : . : . : . :
rJMFF029N04+ CTCTATCAAGGAAAAAAAGGAGAAAGATGCGTCTAGCTGAACTTAAGCCATCTCACCGGA
rJMSF028A03+ CTCTATCAAGGAAAAAAAGGAGAAAGATGCGTCTAGCTGAACTTAAGCCATCTCACCGCA
rJMSF036F09+ CTCTATCAAGGAAAAAAAGGAGAAAGATGCGTCTAGCTGAACTTAAGCCATCTCACCGGA
____________________________________________________________
consensus CTCTATCAAGGAAAAAAAGGAGAAAGATGCGTCTAGCTGAACTTAAGCCATCTCACCGGA
. : . : . : . : . : . :
rJMFF029N04+ GGCTTTTGGCATTTGGGTTCAATAAGAAGAAGTAGCATTTTGGCGAAACTAATTCATTGT
rJMSF028A03+ GGCTTTTGGCATTTGGGTTCAATAAGAAGAAGTAGCATTTTGGCGAAACTAATTCATTGT
rJMSF036F09+ GGCTTTTGGCATTTGGGTTCAATAAGAAGAAGTAGCATTTTGGCGAAACTAATTCATTGT
____________________________________________________________
consensus GGCTTTTGGCATTTGGGTTCAATAAGAAGAAGTAGCATTTTGGCGAAACTAATTCATTGT
. : . : . : . : . : . :
rJMFF029N04+ GAAGGGTTTGGTCAACTTTACAAACTAATTGGCTCCTTGTCAAGAATCAGAGCAGACTAC
rJMSF028A03+ GAAGGGTTTGGTCAACTTTACAAACTAATTGGCTCCTTGTCAAGAATCAGAGCAGAGTAC
rJMSF036F09+ GAAGGGTTTGGTCAACTTTACAAACTAATTGGCTCCTTGTCAAGAATCAGAGCAGACTAC
____________________________________________________________
consensus GAAGGGTTTGGTCAACTTTACAAACTAATTGGCTCCTTGTCAAGAATCAGAGCAGACTAC
. : . : . : . : . : . :
rJMFF029N04+ TAAGTGATTTCTGCGGAAGCACAACTGAAATTTTCCATTTTCTTCATGCTATATCAAATT
rJMSF028A03+ TAAGTGATTTCTGCAGAAGCACAACTGAAATTTTCCATTTTCTTCATGCTATATCAAATT
rJMSF036F09+ TAAGTGATTTCTGCAGAAGCACAACTGAAATTTTCCATTTTCTTCATGCTATATCAAATT
____________________________________________________________
consensus TAAGTGATTTCTGCAGAAGCACAACTGAAATTTTCCATTTTCTTCATGCTATATCAAATT
. : . : . : . : . : . :
rJMFF029N04+ TCATACAGCAACTTGTCCTCTTGAAGTTAGTATTTGCTTGGGGATGCAAAATTTTGTTCT
rJMSF028A03+ TCATACAGCAACTTGTCCTCTTGAAGTTAGTATTTGCTTGGGGATGCAAAATTTTGTTCT
rJMSF036F09+ TCATACAGCAACTTGTCCTCTTGAAGTTAGTATTTGCTTGGGGATGCAAAATTTTGTTCT
____________________________________________________________
consensus TCATACAGCAACTTGTCCTCTTGAAGTTAGTATTTGCTTGGGGATGCAAAATTTTGTTCT
. : . : . : . : . : . :
rJMFF029N04+ TGAGTAGCTTCTATATCTGAATTGTGGGGATTGTTTGCCCTTTCATAGTTGGTTTTTTGT
rJMSF028A03+ TGAGTAGCTTCTATATCTGAATTGTGGGGATTGTTTGCCCTTTCATAGTTGGTTTTTTGT
rJMSF036F09+ TGAGTAGCTTCTATATCTGAATTGTGGGGATTGTTTGCCCTTTCATAGTTGGTTTTTTGT
____________________________________________________________
consensus TGAGTAGCTTCTATATCTGAATTGTGGGGATTGTTTGCCCTTTCATAGTTGGTTTTTTGT
. : . : . : . : . : . :
rJMFF029N04+ TGTTGTTGGG--ATGGTTGTCGTAGATAGACTTTGTAGCAGGCTCTTCAGAACATTAAAA
rJMSF028A03+ TGTTGTTGGGATATGGTTGTCATAGATAGACTTTGTAGCAGGCTCTTCAGAACATTAAAA
rJMSF036F09+ TGTTGTTGGG--ATGGTTGTCGTAGATAGACTTTGTAGCAGGCTCTTCAGAACATTAAAA
____________________________________________________________
consensus TGTTGTTGGG--ATGGTTGTCGTAGATAGACTTTGTAGCAGGCTCTTCAGAACATTAAAA
. : . : . : . : . : . :
rJMFF029N04+ GAATG
rJMSF028A03+ GAATG
rJMSF036F09+ GAATGCTCTATTCTCTTGTGTCCTTTTAACATTATTGTACCCTCTGTCTTTTATACGTCT
____________________________________________________________
consensus GAATGCTCTATTCTCTTGTGTCCTTTTAACATTATTGTACCCTCTGTCTTTTATACGTCT