Contig 010029:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF027L23-                                                       GGCGCAAACAGCGCTC
JMSF035J14-                                                       GGCGCAAACAGCGCTC
                      ____________________________________________________________
consensus                                                         GGCGCAAACAGCGCTC
 
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JMSF027L23-           TCGGTACGGTTCTCATTTTATAATAAATCCAGATTGTTCAAAGTGACAAGTTAAAACTGT
JMSF035J14-           TCGGTACGGTTCTCATTTTATAATAAATCCAGATTGTTCAAAGTGACAAGTTAAAACTGT
                      ____________________________________________________________
consensus             TCGGTACGGTTCTCATTTTATAATAAATCCAGATTGTTCAAAGTGACAAGTTAAAACTGT
 
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JMSF027L23-           TTTTCTCCGATCAATCTCCGGGCGGTCAGAGAATTTTTTTTTCTGTGGATCTTCCGGCCA
JMSF035J14-           TTTTCTCCGATCAATCTCCGGGCGGTCAGAGAATTTTTTTTTCTGTGGATCTTCCGGCCA
                      ____________________________________________________________
consensus             TTTTCTCCGATCAATCTCCGGGCGGTCAGAGAATTTTTTTTTCTGTGGATCTTCCGGCCA
 
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JMSF027L23-           ATTCAAGAATGAGCCAGGTGTTCGAAGGATACGAACGGCAATACTGTGAGCTTTCAGCTA
JMSF035J14-           ATTCAAGAATGAGCCAGGTGTTCGAAGGATACGAACGGCAATACTGTGAGCTTTCAGCTA
                      ____________________________________________________________
consensus             ATTCAAGAATGAGCCAGGTGTTCGAAGGATACGAACGGCAATACTGTGAGCTTTCAGCTA
 
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JMSF027L23-           ACTTGACGAAGAAGTGCACCTCAGCTAGTCTCTTAGATGGAGAACAAAAGAAGCAGAAAA
JMSF035J14-           ACTTGACGAAGAAGTGCACCTCAGCTAGTCTCTTAGATGGAGAACAAAAGAAGCAGAAAA
rJMSF027L23+                                                            AAGCAGAAAA
rJMSF035J14+                                                             AGCAGAAAA
                      ____________________________________________________________
consensus             ACTTGACGAAGAAGTGCACCTCAGCTAGTCTCTTAGATGGAGAACAAAAGAAGCAGAAAA
 
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JMSF027L23-           TTTCTGAAGTACAATCTGGATTGGAAGATGCTGAGGCTTTGATTCGCAAAATGGATCTTG
JMSF035J14-           TTTCTGAAGTACAATCTGGATTGGAAGATGCTGAGGCTTTGATTCGCAAAATGGATCTTG
rJMSF027L23+          TTTCTGAAGTACCATCTGGATTGGAAGATGCTGAGGCTTTGATTCGCAAAATGGATCTTG
rJMSF035J14+          TTTCTGAAGTACCATCTGGA-TNGAAGATGCTGAGGCTTTGATTCGCAAAATGGATCTTG
                      ____________________________________________________________
consensus             TTTCTGAAGTACCATCTGGATTGGAAGATGCTGAGGCTTTGATTCGCAAAATGGATCTTG
 
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JMSF027L23-           AGGCTAGGAGTTTACCTCCAAATTTAAAAGCCACGCTTCTTGCGAAGCTAAGAGAATATA
JMSF035J14-           AGGCTAGGAGTTTACCTCCAAATTTAAAAGCCACGCTTCTTGCGAAGCTAAGAGAATATA
rJMSF027L23+          AGGCTAGGAGTTTACCTCCAAATTTAAAAGCCACGCTTCTTGCGAAGCTAAGAGAATATA
rJMSF035J14+          AGGCTAGGAGTTTACCTCCAAATTTAAAAGCCACGCTTCTTGCGAAGCTAAGAGAATATA
                      ____________________________________________________________
consensus             AGGCTAGGAGTTTACCTCCAAATTTAAAAGCCACGCTTCTTGCGAAGCTAAGAGAATATA
 
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JMSF027L23-           AAAGTGATTTGAACAATGTGAAAAATGAAGTCAAAAGGATTACATCAGCCAACCAAGCAG
JMSF035J14-           AAAGTGATTTGAACAATGTGAAAAATGAAGTCAAAAGGATTACATCAGCCAACCAAGCAG
rJMSF027L23+          AAAGTGATTTGAACAATGTGAAAAATGAAGTCAAAAGGATTACATCAGCCAACCAAGCAG
rJMSF035J14+          AAAGTGATTTGAACAATGTGAAAAATGAAGTCAAAAGGATTACATCAGCCAACCAAGCAG
                      ____________________________________________________________
consensus             AAAGTGATTTGAACAATGTGAAAAATGAAGTCAAAAGGATTACATCAGCCAACCAAGCAG
 
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JMSF027L23-           CAAGGGATGAATTGTTTGAATCTGGAATGGCAGATGCCAAGGCGGTATCAGCTGATCAAA
JMSF035J14-           CAAGGGATGAATTGTTTGAATCTGGAATGGCAGATGCCAAGGCGGTATCAGCTGATCAAA
rJMSF027L23+          CAAGGGATGAATTGTTTGAATCTGGAATGGCAGATGCCAAGGCGGTATCAGCTGATCAAA
rJMSF035J14+          CAAGGGATGAATTGTTTGAATCTGGAATGGCAGATGCCAAGGCGGTATCAGCTGATCAAA
                      ____________________________________________________________
consensus             CAAGGGATGAATTGTTTGAATCTGGAATGGCAGATGCCAAGGCGGTATCAGCTGATCAAA
 
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JMSF027L23-           GACAAAGACTGATGATGTCAACTGAGAGATTAAATCAGTCCAGTGATAGGATTAGAGAAG
JMSF035J14-           GACAAAGACTGATGATGTCAACTGAGAGATTAAATCAGTCCAGTGATAGGATTAGAGAAG
rJMSF027L23+          GACAAAGACTGATGATGTCAACTGAGAGATTAAATCAGTCCAGTGATAGGATTAGAGAAG
rJMSF035J14+          GACAAAGACTGATGATGTCAACTGAGAGATTAAATCAGTCCAGTGATAGGATTAGAGAAG
                      ____________________________________________________________
consensus             GACAAAGACTGATGATGTCAACTGAGAGATTAAATCAGTCCAGTGATAGGATTAGAGAAG
 
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JMSF027L23-           GTCGAAAAGTGATGCTGGAAACTGAAGAGCTTGGGGTTTCAATTCTTCAAGATTTGCACC
JMSF035J14-           GTCGAAAAGTGATGCTGGAAACTGAAGAGCTTGGGGTTTCAATTCTTCAAGATTTGCACC
rJMSF027L23+          GTCGAAAAGTGATGCTGGAAACTGAAGAGCTTGGGGTTTCAATTCTTCAAGATTTGCACC
rJMSF035J14+          GTCGAAAAGTGATGCTGGAAACTGAAGAGCTTGGGGTTTCAATTCTTCAAGATTTGCACC
                      ____________________________________________________________
consensus             GTCGAAAAGTGATGCTGGAAACTGAAGAGCTTGGGGTTTCAATTCTTCAAGATTTGCACC
 
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JMSF027L23-           AACAACGGCAGTCTCTTCTGCATGCTCATAACACGCTTCATGGAGT              
JMSF035J14-           AACAACGGCAGTCTCTTCTGCATGCTCATAACACGCTTCATGGAGT              
rJMSF027L23+          AACAACGGCAGTCTCTTCTGCATGCTCATAACACGCTTCATGGAGTGGATGACAATATTA
rJMSF035J14+          AACAACGGCAGTCTCTTCTGCATGCTCATAACACGCTTCATGGAGTGGATGACAATATTA
                      ____________________________________________________________
consensus             AACAACGGCAGTCTCTTCTGCATGCTCATAACACGCTTCATGGAGTGGATGACAATATTA
 
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rJMSF027L23+          GTAGGAGCAAGAAGATACTGACTACCATGTCAAGAAGGATGAGCAGGAATAAATGGATCA
rJMSF035J14+          GTAGGAGCAAGAAGATACTGACTACCATGTCAAGAAGGATGAGCAGGAATAAATGGATCA
                      ____________________________________________________________
consensus             GTAGGAGCAAGAAGATACTGACTACCATGTCAAGAAGGATGAGCAGGAATAAATGGATCA
 
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rJMSF027L23+          TTGGATCAATCATTGCAGTCTTGGTGATTGCAATCATATTGATTCTTTACTTTAAGCTTT
rJMSF035J14+          TTGGATCAATCATTGCAGTCTTGGTGATTGCAATCATATTGATTCTTTACTTTAAGCTTT
                      ____________________________________________________________
consensus             TTGGATCAATCATTGCAGTCTTGGTGATTGCAATCATATTGATTCTTTACTTTAAGCTTT
 
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rJMSF027L23+          CCCATTAGTCAAAATGCCCAGGTTTTTGCATCTCCGTCCTTTTTTCGTGTTTGAAACTGG
rJMSF035J14+          CCCATTAGTCAAAATGCCCAGGTTTTTGCATCTCCGTCCTTTTTTCGTGTTTGAAACTGG
                      ____________________________________________________________
consensus             CCCATTAGTCAAAATGCCCAGGTTTTTGCATCTCCGTCCTTTTTTCGTGTTTGAAACTGG
 
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rJMSF027L23+          AATGCATGCATTTTGGAACATCTATTCTCATCTACTGAACTTCTGGTTGTGGGTCACTTT
rJMSF035J14+          AATGCATGCATTTTGGAACATCTATTCTCATCTACTGAACTTCTGGTTGTGGGTCACTTT
                      ____________________________________________________________
consensus             AATGCATGCATTTTGGAACATCTATTCTCATCTACTGAACTTCTGGTTGTGGGTCACTTT
 
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rJMSF027L23+          GAAGCCTTTGTTTGGTAATGGTATGTCGTGCTCGAACCTTCAAACTGCATTTTTA     
rJMSF035J14+          GAAGCCTTTGTTTGGTAATGGTATGTCGTGCTCGAACCTTCAAACTGCATTTTTATAACT
                      ____________________________________________________________
consensus             GAAGCCTTTGTTTGGTAATGGTATGTCGTGCTCGAACCTTCAAACTGCATTTTTATAACT