clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF029M10 | Sequence | 424 | 011047 (3) | ref|XP_008338810.1| | 2e-27 | PREDICTED: cytochrome b-c1 complex subunit 9-like [Malus domestica] | 241 | 010023 (3) | ref|XP_009768774.1| | 5e-40 | PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic i |
JMSF034A11 | Sequence | 650 | 010023 (3) | ref|XP_006363700.1| | 9e-74 | PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic-li | 715 | 010023 (3) | ref|XP_010055575.1| | 6e-116 | PREDICTED: copper chaperone for superoxide dismutase, chloroplastic [Eucalyptus |
This contig is upended
. : . : . : . : . : . :
JMSF034A11- GGGAAGCCTTCAGCTGAACCCCCCCAAAAAAAAAATGTCATTTT
____________________________________________________________
consensus GGGAAGCCTTCAGCTGAACCCCCCCAAAAAAAAAATGTCATTTT
. : . : . : . : . : . :
JMSF034A11- TGAGGTCAGTGGCGACNGCAAAAACAACTGCGATAATAGCAGCGATACCAACGGCAGCTG
____________________________________________________________
consensus TGAGGTCAGTGGCGACNGCAAAAACAACTGCGATAATAGCAGCGATACCAACGGCAGCTG
. : . : . : . : . : . :
JMSF034A11- CCATTGCAGCTTCTTCTTCCTCTTCTTCCAAGCCATCTACTTACTCTCTGCGTCTCTCCA
____________________________________________________________
consensus CCATTGCAGCTTCTTCTTCCTCTTCTTCCAAGCCATCTACTTACTCTCTGCGTCTCTCCA
. : . : . : . : . : . :
JMSF034A11- AGAACCCCAGTTTCTGGTCGGTTTCTTGTTCCAACCCAATTCTCANACCCGCCGGACTTG
____________________________________________________________
consensus AGAACCCCAGTTTCTGGTCGGTTTCTTGTTCCAACCCAATTCTCANACCCGCCGGACTTG
. : . : . : . : . : . :
JMSF034A11- CTTTTGCGAAATCCTACCACCCTCCTTCGGCTGTTCANATGGAGGCGCCTTCTTCCGATC
____________________________________________________________
consensus CTTTTGCGAAATCCTACCACCCTCCTTCGGCTGTTCANATGGAGGCGCCTTCTTCCGATC
. : . : . : . : . : . :
JMSF034A11- AACACTTATCCTCCCTTCAGGACGGCGCCGCCTTGCCGGAATTGCTGACAGAGTTTATGG
____________________________________________________________
consensus AACACTTATCCTCCCTTCAGGACGGCGCCGCCTTGCCGGAATTGCTGACAGAGTTTATGG
. : . : . : . : . : . :
rJMSF029M10+ CTGTGTTAAGTCTGTCAAGAGTAAATTGCAGGCAATTGAAG
JMSF034A11- TGGAAATGTCTTGTGAAGGCTGTGTTAAGTCTGTCAAGAGTAAATTGCAGGCAATTGAAG
____________________________________________________________
consensus TGGAAATGTCTTGTGAAGGCTGTGTTAAGTCTGTCAAGAGTAAATTGCAGGCAATTGAAG
. : . : . : . : . : . :
rJMSF029M10+ GGGTGAAGAATGTGGATGTGGATNTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
JMSF034A11- GGGTGAANAATGTGGATGTGGATCTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
rJMSF034A11+ AATGTGGATGTGGATCTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
____________________________________________________________
consensus GGGTGAAGAATGTGGATGTGGATCTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
. : . : . : . : . : . :
rJMSF029M10+ CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
JMSF034A11- CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
rJMSF034A11+ CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
____________________________________________________________
consensus CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
. : . : . : . : . : . :
rJMSF029M10+ AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
JMSF034A11- AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
rJMSF034A11+ AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
____________________________________________________________
consensus AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
. : . : . : . : . : . :
rJMSF029M10+ TTTTTGGAGTCGTTCGTTTT
JMSF034A11- TTTTTGGAGTCGTTCGTTTTGCCCAGGTGACTATGGAGATGGCTAGAATCGAAGCTAACT
rJMSF034A11+ TTTTTGGAGTCGTTCGTTTTGCCCAGGTGACTATGGAGATGGCTAGAATCGAAGCTAACT
____________________________________________________________
consensus TTTTTGGAGTCGTTCGTTTTGCCCAGGTGACTATGGAGATGGCTAGAATCGAAGCTAACT
. : . : . : . : . : . :
JMSF034A11- TCACTG
rJMSF034A11+ TCACTGGACTCTCACCTGGAAGGCACGGTTGGTCAATCAATCAATATGGCGATCTGACAC
____________________________________________________________
consensus TCACTGGACTCTCACCTGGAAGGCACGGTTGGTCAATCAATCAATATGGCGATCTGACAC
. : . : . : . : . : . :
rJMSF034A11+ GAGGCGCAGCCAGCACTGGCAACGTGTACAATCCAACTCCCGAGACTGAAAACCAGCCAC
____________________________________________________________
consensus GAGGCGCAGCCAGCACTGGCAACGTGTACAATCCAACTCCCGAGACTGAAAACCAGCCAC
. : . : . : . : . : . :
rJMSF034A11+ TTGGCGACCTGGGAACACTAGATGTCGATGAAAAAGGTGAAGCATTCTTTTCTGGAGTTA
____________________________________________________________
consensus TTGGCGACCTGGGAACACTAGATGTCGATGAAAAAGGTGAAGCATTCTTTTCTGGAGTTA
. : . : . : . : . : . :
rJMSF034A11+ AAGAAAAGCTAAGAATCGTGGATCTCATCGGGCGAGCAATAGTTGTGTATGAAACCGAAG
____________________________________________________________
consensus AAGAAAAGCTAAGAATCGTGGATCTCATCGGGCGAGCAATAGTTGTGTATGAAACCGAAG
. : . : . : . : . : . :
rJMSF034A11+ ATAAATCAGATCGAGGCATTAAAGCAGCAGTGATAGCTAGAAGTGCTGGAGTTGGTGAGA
____________________________________________________________
consensus ATAAATCAGATCGAGGCATTAAAGCAGCAGTGATAGCTAGAAGTGCTGGAGTTGGTGAGA
. : . : . : . : . : . :
rJMSF034A11+ ACTACAAGAAACTCTGCACCTGTGATGGAGTTACTATCTGGGAAGCAAATGCCAAAATCT
____________________________________________________________
consensus ACTACAAGAAACTCTGCACCTGTGATGGAGTTACTATCTGGGAAGCAAATGCCAAAATCT
. : . : . : . : . : . :
rJMSF034A11+ AAATGTGTATAGTTTCTTGATTTCTGTTGGATTTGTCATACATTTGCAAGCTTGAACACA
____________________________________________________________
consensus AAATGTGTATAGTTTCTTGATTTCTGTTGGATTTGTCATACATTTGCAAGCTTGAACACA
. : . : . : . : . : . :
rJMSF034A11+ AACCCAGAAAGTAAAGAAGACAAGATTTACGAGATTCAACACATCCACATAAATGAAACT
____________________________________________________________
consensus AACCCAGAAAGTAAAGAAGACAAGATTTACGAGATTCAACACATCCACATAAATGAAACT